BAC Information

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BAC

Clone NameMSMg01-099C22
Chromosome11 (Build37)
Map Location 19,713,136 - 19,713,502
singlet/doubletsinglet
Overlap geneLOC665868
Upstream geneMeis1, LOC635455, LOC100042708, Glns-ps1
Downstream geneLOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099C22.T7 (MSMg01no099_c22.b1)MSMg01-099C22.TJ (MSMg01no099_c22.g1)
ACCAG315178AG315179
length730748
length of high quality
(start - end)
370 (41 - 410)159 (46 - 204)
definitionCHROMAT_FILE: MSMg01no099_c22.b1 PHD_FILE: MSMg01no099_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:32 2005CHROMAT_FILE: MSMg01no099_c22.g1 PHD_FILE: MSMg01no099_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:56:32 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTCTGTTCACCAGACTGGCCTCAAATTCACAGAGATCTGCCTGAGTCTT
CCTCCCGAGTTCTGGGATTAAAGGTGTGTGGCCCCACTACCTGGCAATTT
TTATAAGTATAGTATCATAAAGCCCAACCAACTCTGTTTTTGAAGAAACT
CAATTTTGTGCAAGACAAGGGGCTAAACTCCAAATCCAGGAAGAAATCAC
AGAGTCCTGAGCAAGCACCCTATGGCAACCCACTCCTCTTAGCAACAGCC
AGTCAGGCTGCAATAGCGAGGTCAAGGTACATAGAGATTGTAGTGTTTTA
TCAATAAAAAGAAAAACAGAACCAGGATATGTTTACTAGTGATGCAGCGT
GGTGAGGTGGAAGGCGGTGGCTCTGCGGGCCCATGCTAAGGCATCCCTTC
CCCTTGAGATACCAGCCATACAATAGATACACTACGGCACAGAGCTTATT
TAAGGCACTATAATGTCAGCTGCCCAACGAGTAAAGGCCCACAGAGATAT
ACATACATATATATTTCCCCCCTCCACTTTTTTTTTCCCTCCCTCCTCTC
TCCTTTCCCCCCCTACCTCTCATTTCTCCTTTCCTCCTTTTTTCCTTTCT
TTCTCCTCTTCCTTCTCTCTCTCTCTCCTCTCCATCTCTTTCTCTCCTCT
TCTCACCCCCCCCCTCTTCTTTATCTCTCG
GCGGGTGCCCACCGGAGGTGAACTATAGAAGTTTACGTGACCTCAGTAAT
TAAAACAACAGAAATAGAGGCAGAGGCAGAGGCAGAGGAGGCAGGAGGAT
CTCTGTGAGTTTGAGGATAGCCTGGTCTACAAGGGGAGTTCTAGAACAGC
CAGCTCTGATACACAGAGAAACCCTGTGTGGGGCTTGGCGGCGGGGGGGG
GGGGAACCCCTTCTTGACCCCCTTTTTTTTTTCCCCTCCCCCCCTTTCCC
GGCCCGCCCGTCTTCTTACTGCCCCCCCCCCCACCCTTTTAGGTGGGTTT
CAGGCGCCCCCCCCCCGCCCCAGCCTCTTTTTTTTTTCCCCCCCCCCCCC
CCCGGCCTGTGTTTTTTTACCATTACTCCCCTTTTTCCCCCCCCCCCTTA
TCCTTTTATCACTCTCTCCTTCCCCTCTCCGCCTCCCCCCTCTTTCTTCC
CCCCTTTTTTCCGTTATCGTTTTCTCCCCTTTTTTCTCCCCCCCCCTCCC
TTCTTATTCTCCCCCTTTCCCCCCTCCTTTTACTTCCCTACCTCTTCCCC
ATTTCCTTTTCTTCTTCTCATTTTGTTCCCCCCACACTATCCGCTCCTCA
TCTTCCCCCCTTTTTTCTACTTGCCCAGTTCTGCTAGTTTTTTTTTCCTC
CCCTTTCCCCCTCTCTGCACACTTCTTTTATTTCCCTTTCTTTTTTTTTT
TCCCCTTTCCTTATTCCCCCCTCCCTCCTTTTTCCCCCCCCTCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_c22.b1 MSMg01no099_c22.b1 CHROMAT_FILE:
MSMg01no099_c22.b1 PHD_FILE: MSMg01no099_c22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:56:32 2005
         (370 letters)



>mm_chr11_19712933_19713702
          Length = 770

 Score =  625 bits (323), Expect = 0.0
 Identities = 356/367 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcagtctgttcaccagactggcctcaaattcacagagatctgcctgagtcttcct 63
           ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcagtctgtagatcagactggcctcaaattcacagagatctgcctgagtcttcct 263

                                                                       
Query: 64  cccgagttctgggattaaaggtgtgtggccccactacctggcaatttttataagtatagt 123
           |||| |||||||||||||||| ||||||| ||||||||||||||||||||||| ||||||
Sbjct: 264 cccgtgttctgggattaaaggcgtgtggcaccactacctggcaatttttataattatagt 323

                                                                       
Query: 124 atcataaagcccaaccaactctgtttttgaagaaactcaattttgtgcaagacaaggggc 183
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 324 atcgtaaagcccaaccaactctgtttttgaagaaactcaattttgtgcaagacaagggac 383

                                                                       
Query: 184 taaactccaaatccaggaagaaatcacagagtcctgagcaagcaccctatggcaacccac 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaactccaaatccaggaagaaatcacagagtcctgagcaagcaccctatggcaacccac 443

                                                                       
Query: 244 tcctcttagcaacagccagtcaggctgcaatagcgaggtcaaggtacatagagattgtag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcctcttagcaacagccagtcaggctgcaatagcgaggtcaaggtacatagagattgtag 503

                                                                       
Query: 304 tgttttatcaataaaaagaaaaacagaaccaggatatgtttactagtgatgcagcgtggt 363
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct: 504 tgttttatcaataaaaagaaaaacagaaccaggatatgtttagtagtgatgcagtgtggt 563

                  
Query: 364 gaggtgg 370
           |||||||
Sbjct: 564 gaggtgg 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)