BAC Information

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BAC

Clone NameMSMg01-099J24
Chromosome11 (Build37)
Map Location 67,451,662 - 67,452,314
singlet/doubletsinglet
Overlap geneGas7
Upstream geneA530088H08Rik, 9130409J20Rik, A730055C05Rik, 2310004I24Rik, Sco1, Myh3, Myh2, Myh1, Myh4, Myh8, Myh13
Downstream geneRcvrn, Glp2r, LOC544792, Dhrs7c, LOC100041899, Usp43, Wdr16, Stx8, Ntn1, Pik3r5, BB220380, BC024997, Ccdc42
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-099J24.T7 (MSMg01no099_j24.b1)MSMg01-099J24.TJ (MSMg01no099_j24.g1)
ACCAG315518AG315519
length7131,342
length of high quality
(start - end)		657 (42 - 698)---
definitionCHROMAT_FILE: MSMg01no099_j24.b1 PHD_FILE: MSMg01no099_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:11 2005CHROMAT_FILE: MSMg01no099_j24.g1 PHD_FILE: MSMg01no099_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:57:12 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCCTCAAACTATAATGCAGGCTTTATCCATTCATTTTAATGTACCCTTC
CTTACTCTTTTCTAAATAGCATGTAATTATGATCTTAAGTTCTCTTTTAG
CCTGACAGTCCTTAAGAGGGCCCTTTCTTAAGTTTCCAACTATCTGGAAG
TTTGAAGATTGGGAGCCTTGTGTGTTTATTTTTCATTATTAATACCTACT
TTTATTGTGTTCTGGTCAAAGAATGTGGCCTGAATTATTTATGCCTTTTG
CTATGCACTGGCAGTTTATTTGTAGCTTAAGCATGGCTAACATTTCCAAT
GTCCCATGGCTTCTTGGCAAATGTCCTCTTTGTTTATAGGGAAAGATGTT
TTATCCATGTCCTTCACTCAGCCCCTTAAATTAAATTATGCAGACCTCAT
TTATCATTATGCCTGTCTATGAATCAGCCCCAGAGCCCAAGCAGTGTGCC
AAGGTTTCTACCACCGTCTCATACTTTCTTTGTGAGCCATGGTGTTCCCT
ATGTGGGTTGTCCACCTTGTAGCCCTTCAGCTTCAACCCACCACCATGCT
GGGCAGAAACATTCTACGTCCCTCTCCAAGCACTGAATAAGGGACCTGCT
GTCTGCCAGTTTCTCTTATCTTGGTGTGTGTGTGTGTGTGTGTGTGTGTG
CGCCTGTGCGTAN

CGCCTTGTCGCTTCGTGTTTCTCCTCTGCTCTTTTTTTCCGCTCTCCGTT
CCGGTTGGTTGCTGTTCCGGTTTGTGTGGGGTATGTCGTTGCCGGCGTGA
AATTTTGTCTGCGGTTTGGGTTGCGGGGTTTGTTAGAACACGCGGGTGGC
CAATATTAATAACGCGGCGGGAATAGAAAACTACCCGTGTGTCCTTGATC
AACAATTGTATGTGGGGTTGTGCCGCGACAAAATACCGACACCTTGTGAC
GGCGTGGTACCGCCGGCGGATACGTTCGCGCGGGGTCGCTCGGCATTGTA
TCGTGGGCGACCAGATGCGTTTCGCATCTGGACGCGAGATTGATCGTACG
GCGGTGTGTAGTTATGTGGCTCTATGTCCCTGCGTTAAACAACATTTTCG
AATTCGGCGTATAATAATGAGGGCGGGGCGGTGCCCCAGAGTATATTATT
GTTATTCACCGGCGCAAGCTCTAAGTTTTCACAGCTTATGCCCCGATTAT
AGTCAGCGCCGCGGCGCATCTTTTTTATGTTTTATTCATACACGGGGCGC
GCTTCTTACTGCCATAAGCGACATATTATAAAAAAACGAGGTTACTGAGG
AAAAAAAAGTGCGCAGAGGGAGAGCGAGAGCGATAAAGTAAGTATTCAAT
TAGGGGGCGCCGTTGTCTGATACACGGCACACGACGCGGCGAGTAAAATT
TCGTTGAATAATCGAAACANGTGGGTGTGGTGATGGACCCTACACCGGTT
TGTTTTACGCCGCGTTTATTAACCGCACTCGTTCTGCCGTATGATTCCAT
TAGCCGGACCATTATCTAGCGACATGTAACGCTCGCCGTCGCGCATTTTA
TATCCCTACATGTATTGATGTTCAGATCGCGCCGATATATTTCAATGCGT
CTAGCGCGGCGCGCCGCGATACTGACTAATAGAATTTGGCTGCGCCACGC
CGTATCGCGTCGGTGATGACGTTTATATATACATAGCGCATTGACTGATA
GTCACACGCAATATCGCCGATATATTATACGCGACACGAAGTGTAGGTTA
ATGCCGGCNGCGATAATATAATAATGGTGTGACATACAGCGATCTGTGTG
CGCGTGGAGTGGATTATTTAAGNATATGATGGCGCCGCGAATATAGGACA
GTGATCGTGGCATATATAATAACAATCCGGCGACTTATCTGCGCCGAGTA
ATTGTACAGTGCTCTTATATCTTATTTATTTGTTCGCGGGCGATGATATA
TGATATCGAGGCTCGGGGCGTTGTCTGTGAATTAGTTCGCGCCGCCTTGC
GACTCGTGTATATATTTTCGGAGCGCGAGCGACCGCTTACTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no099_j24.b1 MSMg01no099_j24.b1 CHROMAT_FILE:
MSMg01no099_j24.b1 PHD_FILE: MSMg01no099_j24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:11 2005
         (657 letters)



>mm_chr11_67451458_67452514
          Length = 1057

 Score = 1239 bits (641), Expect = 0.0
 Identities = 650/653 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcctcaaactataatgcaggctttatccattcattttaatgtacccttccttac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcctcaaactataatgcaggctttatccattcattttaatgtacccttccttac 264

                                                                       
Query: 65  tcttttctaaatagcatgtaattatgatcttaagttctcttttagcctgacagtccttaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttttctaaatagcatgtaattatgatcttaagttctcttttagcctgacagtccttaa 324

                                                                       
Query: 125 gagggccctttcttaagtttccaactatctggaagtttgaagattgggagccttgtgtgt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gagggccctttcttaagtttccaactatctggaagtttgaagattgggagccttgtgtgt 384

                                                                       
Query: 185 ttatttttcattattaatacctacttttattgtgttctggtcaaagaatgtggcctgaat 244
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 385 ttatttttcattattaatacctacttttattgtgttctggtcaaagaatgtgacctgaat 444

                                                                       
Query: 245 tatttatgccttttgctatgcactggcagtttatttgtagcttaagcatggctaacattt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatttatgccttttgctatgcactggcagtttatttgtagcttaagcatggctaacattt 504

                                                                       
Query: 305 ccaatgtcccatggcttcttggcaaatgtcctctttgtttatagggaaagatgttttatc 364
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 505 ccaatgtcccatggcttcttggcaaatgtcctctttgtttatggggaaagatgttttatc 564

                                                                       
Query: 365 catgtccttcactcagccccttaaattaaattatgcagacctcatttatcattatgcctg 424
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 565 catgtccttcactcagccccttaaattaaattacgcagacctcatttatcattatgcctg 624

                                                                       
Query: 425 tctatgaatcagccccagagcccaagcagtgtgccaaggtttctaccaccgtctcatact 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctatgaatcagccccagagcccaagcagtgtgccaaggtttctaccaccgtctcatact 684

                                                                       
Query: 485 ttctttgtgagccatggtgttccctatgtgggttgtccaccttgtagcccttcagcttca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttctttgtgagccatggtgttccctatgtgggttgtccaccttgtagcccttcagcttca 744

                                                                       
Query: 545 acccaccaccatgctgggcagaaacattctacgtccctctccaagcactgaataagggac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acccaccaccatgctgggcagaaacattctacgtccctctccaagcactgaataagggac 804

                                                                
Query: 605 ctgctgtctgccagtttctcttatcttggtgtgtgtgtgtgtgtgtgtgtgtg 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 ctgctgtctgccagtttctcttatcttggtgtgtgtgtgtgtgtgtgtgtgtg 857


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space:   677409
Effective search space used:   677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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