Query= MSMg01no099_k09.b1 MSMg01no099_k09.b1 CHROMAT_FILE:
MSMg01no099_k09.b1 PHD_FILE: MSMg01no099_k09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:13 2005
(505 letters)
>mm_chr11_96976543_96977447
Length = 905
Score = 946 bits (489), Expect = 0.0
Identities = 498/501 (99%)
Strand = Plus / Plus
Query: 5 gaattcgcttttggcgaggactgaagccccgacccccactcctaagtgtaagtctcttgt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcgcttttggtgaggactgaagccccgacccccactcctaagtgtaagtctcttgt 264
Query: 65 cgccccaatctgggaaagagtcaacctgccacctgaaactctgaaacttcgaggagagaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cgccccaatctgggaaagagtcaacctgccacctgaaactctgaaacttcgaggagagaa 324
Query: 125 acggtttctctcccccaggaagttccgccagtcctggaaggcacagcaaaggccctttcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acggtttctctcccccaggaagttccgccagtcctggaaggcacagcaaaggccctttcc 384
Query: 185 ccagatgggaccatctgagcattctcacgcctctggcaggctcagagctacttagactat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccagatgggaccatctgagcattctcacgcctctggcaggctcagagctacttagactat 444
Query: 245 ccatagtcaacagatatttgttgctgcctcctgtatgcccaggctttgtgactttacaca 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccatagtcaacagatatttgttgctgcctcctgtatgcccaggctttgtgactttacaca 504
Query: 305 aagtgtttgctcgctgtctcttgtccgccgcccccaccccccatcgctagcctcccaccc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aagtgtttgctcgctgtctcttgtccgccgcccccaccccccatcgctagcctcccaccc 564
Query: 365 caccccccaggcccgaggatgatgcttgtccctctagcccaggaggaaacatggaagctg 424
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 565 caccccccaggcccgaggatgatgcttgtccctctagcccaggaggaaacttggaagctg 624
Query: 425 tctcccaagaagattgcacccaaagcagcccacggtgggctgggctggctgaaatgctcc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tctcccaagaagattgcacccaaagcagcccacggtgggctgggctggctgaaatgctcc 684
Query: 485 cacaaaacctcgttcacgtgg 505
||||||| |||||||||||||
Sbjct: 685 cacaaaagctcgttcacgtgg 705
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no099_k09.g1 MSMg01no099_k09.g1 CHROMAT_FILE:
MSMg01no099_k09.g1 PHD_FILE: MSMg01no099_k09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:57:14 2005
(569 letters)
>mm_chr11_97033861_97034830
Length = 970
Score = 1035 bits (535), Expect = 0.0
Identities = 565/583 (96%), Gaps = 14/583 (2%)
Strand = Plus / Minus
Query: 1 attgcaagaaaagcttacttaggctgggcgtggtggcgcaggcctttaatcccagcactg 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 938 attgcaagaaaagcttacttaggctgggcgtggtggcgcacgcctttaatcccagcactg 879
Query: 61 gggaggcagagacaggtggatttctgagttcgaggccagcctggttgcaggacagccagg 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 878 gggaggcagagacaggtggatttctgagtttgaggccagcctggttgcaggacagccagg 819
Query: 121 gctacacagagaaatcctgtctc-------------aaaaaaaaaaaaagcaaagcaaag 167
||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 818 gctacacagagaaatcctgtctcaaaaaaaaaaaaaaaaaaaaaaaaaagcaaagcaaag 759
Query: 168 cttacgtagtgccacatctctcaccaggatgaaaacgatgacgacgatgactggaaccct 227
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 758 cttacgtagtgccacatctgtcaccaggatgaaaacgatgacgacgatgactggaaccct 699
Query: 228 tgcaaagcagctggggtgtgcctcatgctcctgtccacttgctgtgaagatgacattgtg 287
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 698 tgcaaagcagctggggtgtgcctcatgctcctgtccacctgctgtgaagatgacattgtg 639
Query: 288 ccgcatgtccttccctttattaaagagcacatcaagaaccctgactggcgataccgggat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 638 ccgcatgtccttccctttattaaagagcacatcaagaaccctgactggcgataccgggat 579
Query: 348 gcagcagtgatggcttttggcagtatcttggaaggaccagagcctaatcaactgaaacca 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 578 gcagcagtgatggcttttggcagtatcttggaaggaccagagcctaatcaactgaaacca 519
Query: 408 ttagtcatacaggtaaagcccggggaagttttagatttgaaatggaat-ggggtggagag 466
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 518 ttagtcatacaggtaaagcccggggaagttttagatttgaaatggaatgggggtggagag 459
Query: 467 tgcgcacatgtaatatatgtgtgactctaaataatcacaaagatttccaaataattgaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 tgcgcacatgtaatatatgtgtgactctaaataatcacaaagatttccaaataattgaat 399
Query: 527 ggttcgtagcacaggcctacaaacccaaatcacacattcttgt 569
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ggttcgtagcacaggcctacaaacccaaatcacacattcttgt 356
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 569
Length of database: 970
Length adjustment: 10
Effective length of query: 559
Effective length of database: 960
Effective search space: 536640
Effective search space used: 536640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
