BAC Information

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BAC

Clone NameMSMg01-100D23
Chromosome11 (Build37)
Map Location 65,211,731 - 65,212,188
singlet/doubletsinglet
Overlap genenone
Upstream geneHs3st3a1, LOC626959, Elac2, AU040829, 1700086D15Rik, LOC100041790, Myocd
Downstream geneMap2k4, Zkscan6, Dnahc9, Gm879
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-100D23.T7 (MSMg01no100_d23.b1)MSMg01-100D23.TJ (MSMg01no100_d23.g1)
ACCAG315995AG315996
length809733
length of high quality
(start - end)
46 (93 - 138)460 (74 - 533)
definitionCHROMAT_FILE: MSMg01no100_d23.b1 PHD_FILE: MSMg01no100_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:03 2005CHROMAT_FILE: MSMg01no100_d23.g1 PHD_FILE: MSMg01no100_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:58:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTAAACGACTCACATACCGAAGAGGATCCGCGGAATTCATTTT
AAACCAAATGATTATTGAATTATCTTTCTTCACTGACAGAGTGGCAAGAT
GGCTCTGTTCCCTATGATAGAGATGAGCATCAAAACGCGCTGCTAGGTTT
TTTGTTTCGCTTGTTTGTTTTGCTTTTGCTTCTTAGACAGAACACACCTC
ACCCCTCCCCAACAACACCCAACACCCCACCCCCCACACAACCACCCCAA
CACAACACCCCCCCCCCAACTCACCACCTCCCTATCCCCCACCCCCAAAC
CAAAAAACCCACCACCCACACCCACCCCCACCAACCACACCCAACCAAAA
AACACACCAAACCACAACCCCCCCACACCACAACACCAAAAAAAACAAAA
AAAAAACAACAAACCCACACCACACCCCCCCACATACAAAAAATAAAAAC
CCCCAACCCACAAAACCCCAACACAACCCAACCACCACCACCCCCACCAC
CACACACACCCCCCCAAACCTACCCCCAACCCACCCAACCCAAAAACCGC
CGCACCACACACCCCCAACAAAAACACTACCATCACCCTCCCCCCCCAAC
ACCACACCCCAACACCCCCACAACAACACTAACCAACACACACCACCCCC
CCAAACAAACCACCCACACCCCAAACACCCCACACACACCCAACCCTCAC
CCACACCACCACAAAACCCATCCAAACTCACCCCACCCACGACACCCCAC
CCCCCACCACCCCCCCACACATAAAAACTCCCACCACCATACACACCCCC
CCAACCCCA
GAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCACAACTGGAAATGTTTCCTGTTTGTC
CCTTTGCAGGGAGGATTGGATAGCCTCCCATGTCTGTGATTATTGACTTG
CAGCCAGATTCTATTCCTCCATCATTTTGTCTATGGCCTCACCCTTCCCC
TGAAGGCAGGTCTTCTGGAGGTTCTGTACTGTCGTCTCTCAGCCCTGGGT
GCTGGTGATGGGAGGTGATGAACTGGAATCGCCCAAATGTGGTCACATTG
ATTGAAGCAGAGAATGCTGTTCTAAGGCAGTTAGTATAGAGAAAAACCCT
TAGCCACAGGGACTGTTCCAAAGATGGCCATGAGATCTAACTTAAATCAT
ATGGGGGAAAACACCGCTCATGGGTTTTGGGAAATCTTTCTTGCTTTGCT
TTTAATAGAGGCCAACAAGAAGATGTCTCTGTCCTCTCCAGATGGCATGT
GTGTGGTGCTGTGGCCATTTGGTTATAAAGAGCATATGTGGAGAGCTCAG
AGCAAAAACGGAGCTAGGATGGAAACTCTATTGACCTTGAAGATTGACTT
TGACTCAATTTAATTTAGTATTGTGAATTATCCTTTATATCATCATTAAT
AGTTATTGCCTTTTTCGATATTGCGAAGACAAATAAAATTTCCTACCATC
TACAAATTACCTCCTATTTGATTCTCCTCTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no100_d23.g1 MSMg01no100_d23.g1 CHROMAT_FILE:
MSMg01no100_d23.g1 PHD_FILE: MSMg01no100_d23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:03 2005
         (460 letters)



>mm_chr11_65211530_65212388
          Length = 859

 Score =  810 bits (419), Expect = 0.0
 Identities = 449/459 (97%), Gaps = 1/459 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   acaactggaaatgtttcctgtttgtccctttgcagggaggattggatagcctcccatgtc 61
           |||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||
Sbjct: 202 acaactggaaatgtttcctgtttgtccctttgcagggaagattggatagtctcc-atgtc 260

                                                                       
Query: 62  tgtgattattgacttgcagccagattctattcctccatcattttgtctatggcctcaccc 121
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgattattgacttgcagccagattccattcctccatcattttgtctatggcctcaccc 320

                                                                       
Query: 122 ttcccctgaaggcaggtcttctggaggttctgtactgtcgtctctcagccctgggtgctg 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcccctgaaggcaggtcttctggaggttctgtactgtcgtctctcagccctgggtgctg 380

                                                                       
Query: 182 gtgatgggaggtgatgaactggaatcgcccaaatgtggtcacattgattgaagcagagaa 241
           ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 gtgatgggaagtgatgaactggaatcgcccaaatgcggtcacattgattgaagcagagaa 440

                                                                       
Query: 242 tgctgttctaaggcagttagtatagagaaaaacccttagccacagggactgttccaaaga 301
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgctggtctaaggcagttagtatagagaaaaacccttagccacagggactgttccaaaga 500

                                                                       
Query: 302 tggccatgagatctaacttaaatcatatgggggaaaacaccgctcatgggttttgggaaa 361
           ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 501 tggccatgagatctaacttaaatcatatgggggaaaagactgctcatgggttttgggaaa 560

                                                                       
Query: 362 tctttcttgctttgcttttaatagaggccaacaagaagatgtctctgtcctctccagatg 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 561 tctttcttgctttgcttttaatagaggccaacaagaagatgtctctgtcctctccggatg 620

                                                  
Query: 422 gcatgtgtgtggtgctgtggccatttggttataaagagc 460
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gcatgtgtgtggtgctgtggccatttggttataaagagc 659


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 859
Length adjustment: 10
Effective length of query: 450
Effective length of database: 849
Effective search space:   382050
Effective search space used:   382050
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)