Query= MSMg01no100_n24.b1 MSMg01no100_n24.b1 CHROMAT_FILE:
MSMg01no100_n24.b1 PHD_FILE: MSMg01no100_n24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:53 2005
(298 letters)
>mm_chr11_68098767_68099464
Length = 698
Score = 340 bits (176), Expect = 5e-98
Identities = 198/210 (94%), Gaps = 8/210 (3%)
Strand = Plus / Minus
Query: 5 gaattcagcttctgccgcttccgggctgataggagtggaaccctattcacttactgctct 64
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gaattcagcttcaggggcttccgggctgataggagtggaaccctattcacttactgctct 275
Query: 65 ttagtcttctcttagagctctttagcctgctccagactcagaggaaaatacaactctgtg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 ttagtcttctcttagagctctttagcctgctccagactcagaggaaaatacaactctgtg 215
Query: 125 tgcacatgtgcacacacacacacatacacacacacacacccttcagcctgctccagactc 184
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct: 214 tgcacatgtgcatacacacacaca--------cacacacccttcagcctgctccagactc 163
Query: 185 agaggaaactatagtacacacgcacgcaca 214
||||||||||||||||||||||||||||||
Sbjct: 162 agaggaaactatagtacacacgcacgcaca 133
Score = 112 bits (58), Expect = 2e-29
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 200 acacacgcacgcacacacacacacacacacacacacacacacacacacacacacacgtct 259
|||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 acacacacacacacacacacacacacacacacacacacacacacacacacacacacgtct 133
Query: 260 gtgtgtgtgtgtgt 273
||| ||| ||||||
Sbjct: 134 gtgcgtgcgtgtgt 147
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 139
Number of extensions: 45
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 9
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no100_n24.g1 MSMg01no100_n24.g1 CHROMAT_FILE:
MSMg01no100_n24.g1 PHD_FILE: MSMg01no100_n24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:58:54 2005
(458 letters)
>mm_chr11_68005494_68006352
Length = 859
Score = 857 bits (443), Expect = 0.0
Identities = 455/459 (99%), Gaps = 1/459 (0%)
Strand = Plus / Plus
Query: 1 tcctgtatctataggctctttatttag-catttttacacacatgcagcgttggaggattt 59
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 201 tcctgtatctataggctctttatttagtcatttttacacacatgcagtgttggaggattt 260
Query: 60 cgtgaaccttttgaaatccgttttcatgatacagctggggaagagtaagggagagaaagt 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgtgaaccttttgaaatccgttttcatgatacagctggggaagagtaagggagagaaagt 320
Query: 120 ttcctagaaaagcctggcggccagctccagctttgctgagaatggtcaggcccaagaatg 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttcctagaaaagcctggcggccagctccagctttgctgagaatggtcaggcccaaggatg 380
Query: 180 ggaggctgcccagcactgaccagaggcctctcccatgctgccttggtgcacagcaggaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaggctgcccagcactgaccagaggcctctcccatgctgccttggtgcacagcaggaga 440
Query: 240 cctcgcattcattcgcatgtgcatatgtcatggacctcccattgctgtacaggtggaagg 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctcgcattcattcgcatgtgcatatgtcatggacctcccattgctgtacaggtggaagg 500
Query: 300 cgacatactatgacatatcacgaagatgatgggtaagagagctcagactacctcacggtg 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgacatactatgacatatcacgaagatgatgggtaagagagctcagactacctcacggtg 560
Query: 360 tccacttaaaagctaatgacctttgaacttttctcatgtgatgggaacaagcttcatgac 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tccacttaaaagctaatgacctttgaacttttctcatgtgatgggaacaagcttcatgac 620
Query: 420 cacaacaaataggttccaggtatctgaaaggagactggg 458
|||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cacaacaaataggttccaggtatctgaaaggagactggg 659
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 859
Length adjustment: 10
Effective length of query: 448
Effective length of database: 849
Effective search space: 380352
Effective search space used: 380352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
