BAC Information

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BAC

Clone NameMSMg01-101D24
Chromosome11 (Build37)
Map Location 92,191,572 - 92,191,906
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664976, Kif2b
Downstream geneLOC382545, LOC100039286, Car10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101D24.T7 (MSMg01no101_d24.b1)MSMg01-101D24.TJ (MSMg01no101_d24.g1)
ACCAG316711AG316712
length715714
length of high quality
(start - end)
337 (338 - 674)251 (78 - 328)
definitionCHROMAT_FILE: MSMg01no101_d24.b1 PHD_FILE: MSMg01no101_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:23 2005CHROMAT_FILE: MSMg01no101_d24.g1 PHD_FILE: MSMg01no101_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:59:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CACATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGTACCGGCG
CGGAATTCATTTCACATTTCCATAAGAAGGCATCCCTCCACCCAGTATTC
ATTTATTTATATAAATCACTTTTTAAAAATCACTATTATGCTTTAAGTGA
AAGAGAATTACTTCATTTTCCCAACCTCCTTTTTCTCACTTCAGTCCCTC
CCAACCTGTTCCTCTCAAGTTGATAGCCTCCTTTGTGTTGACATAGGTAC
ATCCCCCTCCCACATATGTCTATACACACATTTTCCTTATTTGTGTGTAT
ATGTTTTCAGGGCTGACCACTGTCCATTGGATAGTGAACAAGGGAGCTCA
TTCAAGGGCGATGCTGCTTCTCCCTCTCTCAACAGTCAAGAGTTGCCTAT
GGTCTCTTGACTATGGATGGAATGCCACAGTTTTTTTTTTTCTCTTTCTA
GGTTATTATGTCCACTAACATCATAATTCCAGTCTTGTTTAAGGTAACCA
TTCTCAGGAGATAGGTTTTATTGCAGAATCAATGACAGTCTGGCTCTTAC
AATCTTTCCGCTACTTATGGAATGTTCCGTGAGTCATAGATATTCTTCTA
GATCTGACAAAATTGGAGGCTTTCAAGATGAGTGCTGTGTCTTTTCTTTT
AATTCTTAATACTTGACTATTTGATACTTGCATACAATGCAAAGAGATTA
TTCTCACTCACACTA
NACACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCCGAGGAATACTGAATGGC
AGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGC
AAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAG
ATCAAAAATTCAGGTGACAACAGATGCTGGCGAGGATGTGGAGAAAGAGG
AACACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGA
AATCCGTCTGGCGGTTCCTCAGAAAATTGTATTTAGTACTACCGGAGGAT
CCAGCAATACCTCTCCTGGGCATATATCCAGAACATGCCCCAACTGGTAA
GAAGGACACATGCTCCACTATGTTCATAGCAGCATTATTTATAATAGCCA
GAAGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAA
ATATGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGA
ATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGA
GTGAGGTAACACATTCACCAAGGAAATCACACCATATGTACTCACTGATA
AGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACATTTT
CCTAAACACTTGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_d24.b1 MSMg01no101_d24.b1 CHROMAT_FILE:
MSMg01no101_d24.b1 PHD_FILE: MSMg01no101_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:59:23 2005
         (337 letters)



>mm_chr11_92191548_92192282
          Length = 735

 Score =  640 bits (331), Expect = 0.0
 Identities = 335/337 (99%), Gaps = 2/337 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaagggagctcattcaagggcgatgctgcttctccctctctcaacagtcaagagttgcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 acaagggagctcattcaagggcgatgctgcttctccctctctcaacagtcaagagttgcc 300

                                                                       
Query: 61  tatggtctcttgactatggatggaatgccacagtttttttttttctctttctaggttatt 120
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 299 tatggtctcttgactatggatggaatgccacag--tttttttttctctttctaggttatt 242

                                                                       
Query: 121 atgtccactaacatcataattccagtcttgtttaaggtaaccattctcaggagataggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atgtccactaacatcataattccagtcttgtttaaggtaaccattctcaggagataggtt 182

                                                                       
Query: 181 ttattgcagaatcaatgacagtctggctcttacaatctttccgctacttatggaatgttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttattgcagaatcaatgacagtctggctcttacaatctttccgctacttatggaatgttc 122

                                                                       
Query: 241 cgtgagtcatagatattcttctagatctgacaaaattggaggctttcaagatgagtgctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cgtgagtcatagatattcttctagatctgacaaaattggaggctttcaagatgagtgctg 62

                                                
Query: 301 tgtcttttcttttaattcttaatacttgactatttga 337
           |||||||||||||||||||||||||||||||||||||
Sbjct: 61  tgtcttttcttttaattcttaatacttgactatttga 25


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 337
Length of database: 735
Length adjustment: 9
Effective length of query: 328
Effective length of database: 726
Effective search space:   238128
Effective search space used:   238128
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)