BAC Information

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BAC

Clone NameMSMg01-101M03
Chromosome11 (Build37)
Map Location 113,748,034 - 113,877,844
singlet/doubletdoublet
Overlap geneSdk2
Upstream gene2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e, Cdc42ep4
Downstream geneLOC100041739, LOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-101M03.T7 (MSMg01no101_m03.b1)MSMg01-101M03.TJ (MSMg01no101_m03.g1)
ACCAG317087AG317088
length705846
length of high quality
(start - end)
286 (72 - 357)149 (120 - 268)
definitionCHROMAT_FILE: MSMg01no101_m03.b1 PHD_FILE: MSMg01no101_m03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:05 2005CHROMAT_FILE: MSMg01no101_m03.g1 PHD_FILE: MSMg01no101_m03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,748,034 - 113,748,313)(113,877,701 - 113,877,844)
sequence
CGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTTCTACCTTAACATTAGGTGAATGTTACAGAGTTTTAAACAGGC
TCTCAGATAAACATCCTCACTAATGTCTCTCTGGCCCAGCTCTCTCCTCG
GCTGGCTGTGCTGGCCCCACCCCTTTGCTCTTGAATTTGGGGCTTTTCAG
GCCGAGGGTCCTCACACCATCAGGGAGAGTTCTGGGCAGTTGGGTGGCAA
GCTCTCTGGCCCCCAATGCGTAGGGACCCTAGTGATGTCCTATTTTCTCG
TGGAGAGTTCTTTTTATCTTTAGCTAATGAGAAGATGGGAATAAGATCAT
AAAGATCATAGCCAAGCTCCCACCAGTGTGTGTGCACGCACAAGAATATG
CATGTATGTTTATATGGATCTGTGTACATGTGTTGTGTGTGTAGTCTTTT
TTTTTTTTTTTTTTGATTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGG
CTGTCCTGGAACTCACTTTGTAGATCAGGCTGGCCTCGAACTCACAAATC
CACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCACCACCACC
GCCCGGTGTGTGTGTGCGCGCGTGCACTCCCATATACCATCTTGGCTGTC
CTTTCTTTTGTTACTCATTTTGAGACAGGTTCTCTTACTTGTTTGGAACT
CCCTA
ATTAATATTTATGGAGGTTGGTCTATATCACACCGCCANCCCCNCCACTA
TTCTNNTTTCGATGATATGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTATTCCTGGAATTCCATCCAGACCCACCTCT
GAAGACCGTGTTAAATGTGGCTTTTCTGCCTCTTAACACGGCGTTTATGT
TCCCTCCACATCCCCTCATATAGATGTCATGAGAATCAGACAGGACAGAT
CTGAGCATTACAACTCTGAGATTGTAATCACAGTCACAGAAGTCCCGAGC
CTTCTGCTCTCAAGAGCCAGATGTGCTTGTCTCCAGACATCATGAGAGAT
GTTTCAGCCAGCCTGGACAGGAGCTGATTTTGTTTTTAGGCCAGATAATC
AAATTGATTTGTCCCCCATATTTGGCCTTCACCCACCTCCACATTTTGTG
TTTGAATCTTTTAATATTAATTCTTCTTGTTTTGCTTGCTTTCTATATTC
CATCTTCTCCCCTCGTGTGTTTTTCTCTTATATTACGTATTACCCATTTT
CATTTACCAATGTCCTCTTATCACTTCTTCGGAGTTACCTTCTGTTCGCT
AGGCATTACGCTGCTCTTCTATTATTCATTCTTGACCGCACTCTCCACTT
TTATGGTCTCCCTCCCTCGTGGTCTATTTACTGCGCGCGCCCCCACTTAA
GATAAAATTGTTTCCCTAATTTACTTCTTATCTTTCTTTTCCTCTTTATC
TCCCTTCTTCACACCATGTCCTCTTTCGTCTGTAATTTGACTATCTACTT
CTCTATATTTTATTCCTCCCTAATTACTGACTTAATACGCGCGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no101_m03.b1 MSMg01no101_m03.b1 CHROMAT_FILE:
MSMg01no101_m03.b1 PHD_FILE: MSMg01no101_m03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:05 2005
         (286 letters)



>mm_chr11_113747834_113748519
          Length = 686

 Score =  542 bits (280), Expect = e-158
 Identities = 280/280 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtgaatgttacagagttttaaacaggctctcagataaacatcctcactaatgtctctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggtgaatgttacagagttttaaacaggctctcagataaacatcctcactaatgtctctc 260

                                                                       
Query: 61  tggcccagctctctcctcggctggctgtgctggccccacccctttgctcttgaatttggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcccagctctctcctcggctggctgtgctggccccacccctttgctcttgaatttggg 320

                                                                       
Query: 121 gcttttcaggccgagggtcctcacaccatcagggagagttctgggcagttgggtggcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcttttcaggccgagggtcctcacaccatcagggagagttctgggcagttgggtggcaag 380

                                                                       
Query: 181 ctctctggcccccaatgcgtagggaccctagtgatgtcctattttctcgtggagagttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctctggcccccaatgcgtagggaccctagtgatgtcctattttctcgtggagagttct 440

                                                   
Query: 241 ttttatctttagctaatgagaagatgggaataagatcata 280
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttatctttagctaatgagaagatgggaataagatcata 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no101_m03.g1 MSMg01no101_m03.g1 CHROMAT_FILE:
MSMg01no101_m03.g1 PHD_FILE: MSMg01no101_m03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:05 2005
         (149 letters)



>mm_chr11_113877496_113878044
          Length = 549

 Score =  271 bits (140), Expect = 2e-77
 Identities = 143/144 (99%)
 Strand = Plus / Minus

                                                                       
Query: 6   ctggaattccatccagacccacctctgaagaccgtgttaaatgtggcttttctgcctctt 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ctggaattccatccagacccacctctgaagaccgtgttaaatgtggcttttctgcctctt 290

                                                                       
Query: 66  aacacggcgtttatgttccctccacatcccctcatatagatgtcatgagaatcagacagg 125
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 289 aacacggcgtttatgttccctccacatcccctcatagagatgtcatgagaatcagacagg 230

                                   
Query: 126 acagatctgagcattacaactctg 149
           ||||||||||||||||||||||||
Sbjct: 229 acagatctgagcattacaactctg 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 549
Length adjustment: 8
Effective length of query: 141
Effective length of database: 541
Effective search space:    76281
Effective search space used:    76281
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)