Query= MSMg01no102_b11.b1 MSMg01no102_b11.b1 CHROMAT_FILE:
MSMg01no102_b11.b1 PHD_FILE: MSMg01no102_b11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:34 2005
(487 letters)
>mm_chr11_94135885_94136771
Length = 887
Score = 872 bits (451), Expect = 0.0
Identities = 475/483 (98%)
Strand = Plus / Minus
Query: 5 gaattcctacgccacccttctctccatggctagggccattgaactctgtctcaggcatgg 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gaattcctacgccagccttctctccatggctagggccattgaactctgtctcaggcatgg 628
Query: 65 tttaaatctttatgtagattacattgggtcttatatctgttttgttttgtttgtttgttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tttaaatctttatgtagattacattgggtcttatatctgttttgttttgtttgtttgttt 568
Query: 125 atatgtgtgtacgtgtgcgcgtgcacacaaatgccaatgctgacacacatgtacagccca 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 atatgtgtgtacgtgtgcgcgtgcacacaaatgccaatgctgacacacatgtacagccca 508
Query: 185 gaggaatacaccagtggcttgtttgattgctctcttcttatttctgggaatctacctgtc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 gaggaatacaccagtggcttgtttgattgctctcttcttatttctgggaatctacctgtc 448
Query: 245 cccaccattagagcacagccatgcccagtcggtggacctggggatccaggctcaggtcct 304
|||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||
Sbjct: 447 cccaccattagagcacagccatgcccagccggggggcctggggatccaggctcaggtcct 388
Query: 305 tgtactctcatctctctggcccctgagaattacttttaaagtttgacagcaatgactagg 364
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 387 tgtactctcatctctctggcccctgagaattaattttaaagtttgacagcaatgactagg 328
Query: 365 attagacaggtaagctgtaacaggaaataagaagtattgaatgtcttgggagagaaaggg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 attagacaggtaagctgtaacaggaaataagaagtattgaatgtcttgggagagaaaggg 268
Query: 425 ggaatgcaattgaaggacctgaatggggagctatgtgaccggcggttacaatcctctgag 484
||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 267 ggaatgcgattgaaggacctgaatggggagctatgtgaccggcgggtagaatcctctgag 208
Query: 485 tga 487
|||
Sbjct: 207 tga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no102_b11.g1 MSMg01no102_b11.g1 CHROMAT_FILE:
MSMg01no102_b11.g1 PHD_FILE: MSMg01no102_b11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:34 2005
(339 letters)
>mm_chr11_94061362_94062100
Length = 739
Score = 513 bits (265), Expect = e-150
Identities = 307/335 (91%), Gaps = 24/335 (7%)
Strand = Plus / Plus
Query: 1 ttgaaacaa-cagaaacattatttcaaaataaacccaaatcagatctcttccaaagtgct 59
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttgaaacaaacagaaacattatttcaaaataaacccaaatcagatctcttccaaagtgct 236
Query: 60 aagttaattgcttagggatag-gcacagaggtaggtctggcagtctgttttcacttatgg 118
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 237 aagttaattgcttagggatagagcacagaggtaggtctggcagtctgttttcacttatgg 296
Query: 119 ----------------------tgaactaaaggaagcttttggaaacaaacgttcttgta 156
|||||||||||||||||||||||||||| |||||||||
Sbjct: 297 aagagagagagagagagtagtttgaactaaaggaagcttttggaaacaaaagttcttgta 356
Query: 157 aatatggccccaaatataaagattctatacaaaggtaggctatatgaaatagttgaacat 216
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 357 aatatggccccaaatataaagattatatacaaaggtaggctatatgaaatagttgaacat 416
Query: 217 agggactacaatgtcctatttatttattttatgatgtttattatattttatggtgtgtac 276
|||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 417 agggactacaatgtcctatttatttattttattatgtttattttattttatggtgtgtac 476
Query: 277 atgtgtgtttgtgcaccaagtgtgtgtgtgtgtgt 311
|||||||||||||||||||||||||||||||||||
Sbjct: 477 atgtgtgtttgtgcaccaagtgtgtgtgtgtgtgt 511
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 339
Length of database: 739
Length adjustment: 9
Effective length of query: 330
Effective length of database: 730
Effective search space: 240900
Effective search space used: 240900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
