BAC Information

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BAC

Clone NameMSMg01-102F03
Chromosome11 (Build37)
Map Location 120,603,034 - 120,603,311
singlet/doubletsinglet
Overlap genenone
Upstream gene4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2
Downstream geneHmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102F03.T7 (MSMg01no102_f03.b1)MSMg01-102F03.TJ (MSMg01no102_f03.g1)
ACCAG317498AG317499
length702777
length of high quality
(start - end)		280 (45 - 324)221 (133 - 353)
definitionCHROMAT_FILE: MSMg01no102_f03.b1 PHD_FILE: MSMg01no102_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:52 2005CHROMAT_FILE: MSMg01no102_f03.g1 PHD_FILE: MSMg01no102_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:00:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATGCGCGGAAT
TCCTCAAGATTTCCCTCACTTATCTTAGAGGACAGTCACAACACCACCTC
ACCAACCTAGGAAAACTTTGTGTCTTAATAGTGGAGTGAGAAGAGCTGTT
TCTTCACACCTACAAGTCCAGTGAACATGATCTCACCGTGGCAACAAACT
TTCATGATGTCCCGTAGAGTGACAGACAGCAAGGTTCCTAAGGTGGCCGA
GGACTGGACAGTCTGGACAGTCAACACAGCTGCCAAGGAATTACATGTGT
TAGTGCAGCCAATGAGTCTGTCGCTGAGAACAGGCCACCACTGGTGATCT
TACTACAGCCACAGAGGGGAGAGTCCTCCAGCAGGGCCACAGCTGAGCAG
CACAAGTGTTGGACTGTGAAAGAAATGGTGTTCACAATGGCAGTGGCAAC
TGAGGTTGCTATTTTTGTCTTCTGAATATCTACGGAGGGAAATTTAATGG
CTGAGCTGGAATCACCAATTCTGGGCATGTTGATGGCTAATACAACCCTG
TGGTTCCTTACCGGTCCTCTACCGTCCTTACAGGCTATTCCTCATGCATT
CCTCTTGCTTTGGTCTGCGGCTTGAGATGGACTTTTGCTACCTGGATCCC
GGTTGTGCTGCAACATTCAGCCCTTTACCGTGCCACTTATCTCTTGAAAA
TA

NNNNNNNNNNNNNNNNNNNNNNCCCCNCCCCCCCCCCCCCNNCCCCAGAT
TCGTANNCACGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATGTACAGTATGTTGG
CTTTGAACACAGAGATCAGCCTGTTTGCCTCCTAAGTGCTGGGATTAAAG
GTGTGTACCACCATGCCTGGCCCTTCTCTTGATTCTTTTTTTTTTTTTTT
CTGGATTTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAAC
TTACTCTGTAAACCAGGTTGGCCCCGAATTCAGAAATCTACCTGCCTCTG
CTTCCCAAGTGTTGGGATTAAAGGTGTGTGTCACCACACCCGGCTTCTTT
CACTTGATTCTTGTTTGTCAACACAATTCTATGTCCAATTTTCTCCTGTG
CTGATGAAATCTTTGTTTACTGTTGGCAAGCTTGTTACAGTCAGGCACAA
TTCCTCTTTTCTACTGGCCCTATGCATGTATTTACTGCAAAGGCCAAGTC
CCAATTTTTTGTTTTGAGTTGCTCAAGTTTTGTAAACTTGCATGAATTCT
TATGATAATGGCTCCCACCAAACCTTGTCTGATGTCCATTGTTTAAACTC
CATTTTATCTGTGTAACCCATCTGGATTTCATTTAATAGCCTTGTTCTTG
TTTATTTCTCGCATATTCTCTATTTACTTCTTTTTCTTAATATTATGTTT
CCTTAACTCCGTTCTCAAAACTCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_f03.b1 MSMg01no102_f03.b1 CHROMAT_FILE:
MSMg01no102_f03.b1 PHD_FILE: MSMg01no102_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:00:52 2005
         (280 letters)



>mm_chr11_120602832_120603511
          Length = 680

 Score =  507 bits (262), Expect = e-148
 Identities = 274/278 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattcctcaagatttccctcacttatcttagaggacagtcacaacaccacctcaccaac 62
           ||||||||||||||  |  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattcctcaagatggctgtcacttatcttagaggacagtcacaacaccacctcaccaac 262

                                                                       
Query: 63  ctaggaaaactttgtgtcttaatagtggagtgagaagagctgtttcttcacacctacaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ctaggaaaactttgtgtcttaatagtggagtgagaagagctgtttcttcacacctacaag 322

                                                                       
Query: 123 tccagtgaacatgatctcaccgtggcaacaaactttcatgatgtcccgtagagtgacaga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tccagtgaacatgatctcaccgtggcaacaaactttcatgatgtcccgtagagtgacaga 382

                                                                       
Query: 183 cagcaaggttcctaaggtggccgaggactggacagtctggacagtcaacacagctgccaa 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 cagcaaggttcctaaggtggccgaggactggacagtctggacagtcaacacagctgccaa 442

                                                 
Query: 243 ggaattacatgtgttagtgcagccaatgagtctgtcgc 280
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggaattacatgtgttagtgcagccaatgagtctgtcgc 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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