BAC Information

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BAC

Clone NameMSMg01-102J18
Chromosome11 (Build37)
Map Location 90,181,731 - 90,182,020
singlet/doubletsinglet
Overlap genenone
Upstream gene4932411E22Rik, Ankfn1, Pctp, Tmem100, LOC100039104, Mmd
Downstream geneHlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-102J18.T7 (MSMg01no102_j18.b1)MSMg01-102J18.TJ (MSMg01no102_j18.g1)
ACCAG317706AG317707
length776730
length of high quality
(start - end)
241 (122 - 362)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no102_j18.b1 PHD_FILE: MSMg01no102_j18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:15 2005CHROMAT_FILE: MSMg01no102_j18.g1 PHD_FILE: MSMg01no102_j18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNCCCCCCCCCCCCCCCCCCATAAAAGTTNN
TCTCTATXXXXXXXXXXXXXXXXXXXXXXCTATTTCAAGAGGATCCGCGG
AATTCATTGCAATACCTTTAATAGGGGTTACTTTTTAAAATATTTTTATT
ATGTATTTTCCTCATTTACATTTCCAATGCTATCCCAGGAGTCCCCCATA
TCCTACCCCGCACTCCCCTACCCACCCATTTCCACTGTTTGGCCCTGGCA
TTCCTGGCATATAAAGTTTGGTGTCCAATGGACCTCTCTTTCCAGTGACG
GCTGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCG
GGGTACTGGTTAGTTCATAATGTTTTTGCACCTACAGGGTTGTAGATCTC
TTTAGCTCTTTGTATACTTTCCCTCCCTCCTCCATTGGGGGTCCTGTGAT
CTATCTTATAGCTGACTGTGATTATCCACATCTGTGTTTGCTAGTCCCCG
GCCTAGTTTCATAAGATACAGCTATATCAAGTTCCTTTCAACTTATGCTT
GCTAGTGTATGTTCATGGTGCCATCGTCCGCCCGCTTATTACGTGTAGAA
ACCGTGAGATATGGTCTACTCCCAATGGCCCATCCTTTTGCCTAACCTCC
AAATTTTGTCTTAGATACCCCTTCCATGGGAAATCGTTTCCAATCTCATG
CCATGCTTTTTGTTTTTTCTTTTGCCCTTAGTTTTTCTTAGTTCTAAGAG
ATTTGACAATATAAATCTTAATTTAG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTCCGAAATTCAGTGGCTGCTGTCCCTGAAGGAACTGGAGA
GGTTATACAGACAAAGCGCCAAGAGTTCAGGGTTGAGAATCCAGGGATGA
TGATGAGACAGAGGCTAGTGACACAGGGACAGCCCATGAAATGCCAGGGC
TTGCTGCAAAGCCACCAGAAGTCTGAAAGAGACCAGGAAGGAGCTTTCCC
TAAAACCTTCAGAGAGTAAAGAATACGGCTTTGAAACTTTGATCTATAAA
AAAAAAATATGAGCTTGACTTGTTTTTTGGTACCCGTTGAAGAGTTTAAT
TATACCACTCCTAGTGAACATGCCCCCCACCCCCTCTCCTCTACAGACTA
TACTCAGGGTAAACAAAGCATCTGTATTTTTCTGAACATGTCTTTGTTTC
CCTATCCAGTGGCTGCCTATCTCCTGTGCTCCAGGCCTCCAGGTCAGTGC
CTCCTTCACCCTCATGTTCCTGAGTAGCTTCCGCTTGCTGGAACGTTGAT
GACTTCTCTCGCAGGCTGGTTAAGTGCTCCTTTTCCTATATTCACATAGA
CTTTTCCTGTTTTGTTGTTATTACACCCACCTTGTCTATTCATTACCCGA
GGAGGCTCATGTAGGTTCCCTGTCTCTCTCCTAGTGGCTGATTGCATTGC
AGTTTTCTTCCGGCTAACTAATTAGGTCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no102_j18.g1 MSMg01no102_j18.g1 CHROMAT_FILE:
MSMg01no102_j18.g1 PHD_FILE: MSMg01no102_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:15 2005
         (293 letters)



>mm_chr11_90181531_90182222
          Length = 692

 Score =  524 bits (271), Expect = e-153
 Identities = 286/291 (98%), Gaps = 1/291 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggctgctgtccctgaaggaactggagaggttatacagacaaagcgccaagagttcagggt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ggctgctgtccctgaaggaacaggagaggttatacagacaaagcgccaagagttcagggt 431

                                                                       
Query: 61  tgagaatccagggatgatgatgagacagaggctagtgacacagggacagcccatgaaatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 tgagaatccagggatgatgatgagacagaggctagtgacacagggacagcccatgaaatg 371

                                                                       
Query: 121 ccagggcttgctgcaaagccaccagaagtctgaaagagaccaggaaggagctttccctaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ccagggcttgctgcaaagccaccagaagtctgaaagagaccaggaaggagctttccctaa 311

                                                                       
Query: 181 aaccttcagagagtaaagaatacggctttgaaactttgatctataaaaaaaaaatatgag 240
           |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 310 aaccttcagagagtaaagaagacggctttgaaactttgatctat-aaaaaaaaatatgag 252

                                                              
Query: 241 cttgacttgttttttggtacccgttgaagagtttaattataccactcctag 291
           |||||||||||||  ||||||||||||||||||||||||||||||||||||
Sbjct: 251 cttgacttgttttaaggtacccgttgaagagtttaattataccactcctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 692
Length adjustment: 9
Effective length of query: 284
Effective length of database: 683
Effective search space:   193972
Effective search space used:   193972
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)