BAC Information

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BAC

Clone NameMSMg01-103A03
Chromosome11 (Build37)
Map Location 98,599,862 - 98,600,349
singlet/doubletsinglet
Overlap genenone
Upstream genePip5k2b, 2810474C18Rik, Ccdc49, LOC100040708, 1700001P01Rik, Rpl23, Lasp1, B230217C12Rik, Fbxo47, Plxdc1, Arl5c, Cacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4
Downstream geneThra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a, Igfbp4, Tns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103A03.T7 (MSMg01no103_a03.b1)MSMg01-103A03.TJ (MSMg01no103_a03.g1)
ACCAG317998AG317999
length713704
length of high quality
(start - end)
372 (50 - 421)511 (74 - 584)
definitionCHROMAT_FILE: MSMg01no103_a03.b1 PHD_FILE: MSMg01no103_a03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:46 2005CHROMAT_FILE: MSMg01no103_a03.g1 PHD_FILE: MSMg01no103_a03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:01:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACAGATTATCCAAATTCATATTTTTTTCTTTTTTTTTTC
TTTTGTTTGTTTTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCT
GGAACTCACTCTGTAGACCAGGTTGGCCTCGAACTCAGAAATCTGCCTGC
CTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCC
ATATTTTTTTTTCTTACAATTTAAATTCTTACCTGTATTCCCCTGAACAT
AAGAGTGGCCCAGATGACCTGAGTTCACTTTCTGGATCCAACATAAAGGT
GGAAAGAGGTACTTGACTCCAAAGTTGTCCTGACTTTCACAAGTGCATCA
TGACTCGTGTAACTATCCACCAACAACACTCTTCTCTCGAGCACACACAC
TCACATGTGCATGCGCACACATACACACACCAGCTCTGATAATAAGTAAA
CTCCCTCGAGGAGTTCTGGGATGGAAAAAGCAACGACTCTTCCCCTTGTG
AAGTCCAACAGCCCAGGGAAACGCCTAAACAAAGGTCTAATTTCCTCCTT
CTTTCCTTCCTTGAGCCCTCTAAGCCGGGTGCTGGAAACCCCATTAACCA
GGTTGGGGGAAATACCCTTCCTCTATCATTCGCGGTCTGGAGGGCCGGAC
TAAGTAAAAAGAT
TTTACAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTTCCGGCGGAATTCAGTTTATCTCCCTTGCCATGTAC
TCTCCCCACACACACCCTTACACACACACACACCACACACACACACACAC
ACACACACACACACACACACACACACACCCTGCCCATCCGTATGTTCCCT
CCTATCCCCTTATCTCTGATTCAAGATACTCCTTCACCTTTCGCAAAAGC
CTGAAGGCCAGCTTGATCGAGATCATTACAGACCCTCCAAGGGGCTCTCT
CTGCCAGCCCCCTCCCCTCCAGCTTATATTTTGGTTGCCAAGGAGGCAGC
AGGAACAGCCTGTTCTCTAGGCTCCAGTGGGAGCAGACATGCCCAAGCCC
CTCCCTCTCTCCTCTCCCTCCCTTCCTCCAAAGGCTGTTGCTAGGAAGCA
CCCCAAGATTCTTGAGAGTTCCACCCCCACCCCCCCCACCCTGTGAACCA
GGAGATATCTTTTCTGCAGAGCCTCCTTCAAAAGCTTGGCAGCCCAAACC
CACTCAGCATCCTTCACCTCTTCTGGGAAGCTTGGAGCTCCTTATCAATT
TGATGAACGAGGGAGCAGGTCCGCCTGCCAGCCAGCCCTGCAGCTAGCTA
GTCCAGGCCCCAGTGATCCCATGCAGAGCTTGCTGAGTGAAATCAGGAAG
GAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_a03.g1 MSMg01no103_a03.g1 CHROMAT_FILE:
MSMg01no103_a03.g1 PHD_FILE: MSMg01no103_a03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:01:46 2005
         (511 letters)



>mm_chr11_98599740_98600650
          Length = 911

 Score =  868 bits (449), Expect = 0.0
 Identities = 485/511 (94%), Gaps = 23/511 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcagtttatctcccttgccatgtactctccccacacacacccttacacacacacacac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||      
Sbjct: 610 attcagtttatctcccttgccatgtactctccccacacacacccttacacacac------ 557

                                                                       
Query: 61  cacacacacacacacacacacacacacacacacacacacacacaccctgcccatccgtat 120
                         ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 --------------cacacacacacacacacacacacacacacaccctgcccatccgtat 511

                                                                       
Query: 121 gttccctcctatccccttatctctgattcaagatactccttcacctttcgcaaaagcctg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 510 gttccctcctatccccttatctctgattcaagatgctccttcacctttcgcaaaagcctg 451

                                                                       
Query: 181 aaggccagcttgatcgagatcattacagaccctccaaggggctctctctgccagccccct 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 aaggccatcttgatcgagatcattacagaccctccaaggggctctctctgccagccccct 391

                                                                       
Query: 241 cccctccagcttatattttggttgccaaggaggcagcaggaacagcctgttctctaggct 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 cccctccagcttagattttggttgccaaggaggcagcaggaacagcctgttctctaggct 331

                                                                       
Query: 301 ccagtgggagcagacatgcccaagcccctccctctctcctctccctcccttcctccaaag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 ccagtgggagcagacatgcccaagcccctccctctctcctctccctcccttcctccaaag 271

                                                                       
Query: 361 gctgttgctaggaagcaccccaagattcttgagagttccacccccaccccccccaccctg 420
           |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||
Sbjct: 270 gctgttgctaggaagcaccccaagattcttgagagttccaccccc---ccccccaccctg 214

                                                                       
Query: 421 tgaaccaggagatatcttttctgcagagcctccttcaaaagcttggcagcccaaacccac 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 tgaaccaggagatatcttttctgcagagcctccttcaaaagcttggcagcccaaacccac 154

                                          
Query: 481 tcagcatccttcacctcttctgggaagcttg 511
           |||||||||||||||||||||||||||||||
Sbjct: 153 tcagcatccttcacctcttctgggaagcttg 123


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 511
Length of database: 911
Length adjustment: 10
Effective length of query: 501
Effective length of database: 901
Effective search space:   451401
Effective search space used:   451401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)