BAC Information

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BAC

Clone NameMSMg01-103N08
Chromosome11 (Build37)
Map Location 27,210,443 - 27,210,638
singlet/doubletsinglet
Overlap genenone
Upstream geneFancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-103N08.T7 (MSMg01no103_n08.b1)MSMg01-103N08.TJ (MSMg01no103_n08.g1)
ACCAG318604AG318605
length719702
length of high quality
(start - end)
196 (89 - 284)213 (70 - 282)
definitionCHROMAT_FILE: MSMg01no103_n08.b1 PHD_FILE: MSMg01no103_n08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:52 2005CHROMAT_FILE: MSMg01no103_n08.g1 PHD_FILE: MSMg01no103_n08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:02:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATATAATCTATCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTC
AGAGAACCGCGGAATTCCCACCATTTTCCCCTAGCATGATATTTTAATTA
CTATTATGATTGTTTGAATCAGAGGGAATATGAAGCTATGGAGCTGGTAA
CTGAGGTTGGAATGTCATTCTGAAATGATGTCTAGCATGTGGATTTTGAG
GCTGGTACAATGTTGCATGGCTTCCTCTGCCTTTCTATCCTATTATAAAT
TTACTTTACAGTTTACCTGCTGTGTGTAAAGTTCCAGGTGAGGGATGCCA
ACATCATTCTAGTCTTATCATTCATCTGGACGTTTCTTTTTTGAGATCTA
ACTCCAGTCCTGGTTAATACCTGCATGATATATAACACCCCGATGGCACC
ACTCATTCTGATCCCCTTTTACATTTGAATTCCCTCAATACTACTGAACG
ACCAAAGCTCTTACCTTTGAAAAACCACATGCTATCTCCCAACCATGAAT
GATCGCGTTGGTATATGCCACAGGATCTGAAATACGTTACTGCCTAGTGA
AGATCACATGCCTTTAATGACCTTCGCATACATCACCTCATTATTTACTA
GCTATTGAACCGAATATTATTCAAAAATTCCCTTTGTATAACCCCACATC
CATTGCCTACATTCCCCCCTTACAACCTTCCCTTATAATACTTCCTGCCT
TTTTCAGGTACTCCTTTTT
TCGATATAGTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTTCTGGAATTCTTTGTTTAGCTCTAAGGCCAATTTTTT
AATGGGGTTATTTGATTTTCTGGAGTCCAACTTCTTGAGTTCTTGATATA
TATTGGATATTATTCCCCTATCTTATTTAGGATAGGTAAAGATCCTTTCC
CAATCTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTTACA
GAAGCTTTGCAATTTTATGAGGTCCCATTTGTCAATTCTCAATTTTACAG
TACAAGCCATTGCTGCTCTATTCTCTTAATTTTTTCCTGTGCCCATATCT
TCAAGGCTTTTCCCCACTTTCTCTTCTATAAGTTCCACTGTTTCTGGCTT
TATGTGGAGTGCCTTGACCCACTTATATTTAATCTTACTACCACGAGATA
ATAATGGATCAATGATCCTGGTATGTCATCCTCCTGATTGACGTTACCCC
ATCACTCAAGATTTCTCATGATATGTACTCACTGATAAGCGGATATTATC
CCATATTCCCTTAATACCTCATATACTAGACTCAATTTGCCCCAACCTTG
CTTCTTCTTGACGATCGAAAACTTTTTTGTGCCCACTCTGTCTTTTCTCT
ACATTGCCAACCCACATTCCCGCGACGAGCTATTTACCCGATGTTTCCAA
TC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no103_n08.b1 MSMg01no103_n08.b1 CHROMAT_FILE:
MSMg01no103_n08.b1 PHD_FILE: MSMg01no103_n08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:02:52 2005
         (196 letters)



>mm_chr11_27210242_27210838
          Length = 597

 Score =  325 bits (168), Expect = 1e-93
 Identities = 189/196 (96%), Gaps = 1/196 (0%)
 Strand = Plus / Plus

                                                                       
Query: 2   tattttaattactattatgattgtttgaatcagagggaatatgaagctatggagctggta 61
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 202 tattttaattactattatgattgtttgaatcagagggaatatgaagctatggagctggga 261

                                                                       
Query: 62  actgaggttggaatgtcattctgaaatgatgtctagcatgtggattttgaggctggtaca 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actgaggttggaatgtcattctgaaatgatgtctagcatgtggattttgaggctggtaca 321

                                                                       
Query: 122 atgttgcatggcttcctctgcctttctatcctattataaattt-actttacagtttacct 180
           ||||| ||||||||||||||| |||||||||| |||||||||| |||||| |||||||||
Sbjct: 322 atgttacatggcttcctctgcttttctatcctgttataaattttactttagagtttacct 381

                           
Query: 181 gctgtgtgtaaagttc 196
           ||||||||||| ||||
Sbjct: 382 gctgtgtgtaaggttc 397


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 597
Length adjustment: 8
Effective length of query: 188
Effective length of database: 589
Effective search space:   110732
Effective search space used:   110732
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)