BAC Information

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BAC

Clone NameMSMg01-104M10
Chromosome11 (Build37)
Map Location 72,752,861 - 72,753,055
singlet/doubletsinglet
Overlap genenone
Upstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119
Downstream geneAtp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-104M10.T7 (MSMg01no104_m10.b1)MSMg01-104M10.TJ (MSMg01no104_m10.g1)
ACCAG319303AG319304
length725822
length of high quality
(start - end)
195 (70 - 264)42 (78 - 119)
definitionCHROMAT_FILE: MSMg01no104_m10.b1 PHD_FILE: MSMg01no104_m10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:09 2005CHROMAT_FILE: MSMg01no104_m10.g1 PHD_FILE: MSMg01no104_m10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:04:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGAGGATCCGCG
GAATTCCTGTGTTCCCTCTCACCGACCTTGGTCTCAGGGTAGAGTTTTAT
GAATTAGACCTAGTTTGCTGGCATTTTAGTAACCATATGAACAGAGATGT
GGGCTACAGTTTTTTGTTTTTGTTTTACTTGTGGGGATTTCTGGCTTGGG
TATCTAACATTGGCCTAAGAAGGCTAAGTGGGAAGTGCTGCTCTCCTGCT
CTCCTGCTTTTGGAAGAGTCTGTGAAGCTGTGGTGTCAACTTTCTCCTAC
TGGTCTGTTACAATCCCCCACTGCTGTTATGCGGCGCCGCTGCCATGCAT
GAGGTCGTCTTTTTCTTATTTCCACTTTCTCCCTTTTTTCTCCTCCCTCC
TTCCTCTCTCATCCCACTCCTCCTCCCACTTTTTTCCATCCCCTCCTCTT
TTATTCTCCCCCCCCTACCCTTTCTTTTCCATTTCTTTCCCTCCCCCTCC
CCTTTTTCTCCCCTTTCTTCTCCCTCTCTCTTCTTCTTCCTTCTCTCTTT
TTCTCCTTCCCTCCTTTCACTCTTCCACCTCTCTTCTCTCTTTTTCTTTT
TTTTTCTCCCCTTTTCCTCCCTCCTTCCTCTCCTTTTTTCCACCCTCCCC
TCCCTCTCCCTTTCTACTTCCTCTTCCCTTTCCTTCTTTCTCCTCCTTCT
CTCCTCCCTTTCCTTCCCACTCCTC
AGAGCGAATGAAGTGGAGAGGCCTGGAGGGCGCCTGTCAGAAGAAGGTAG
GTGAACTATAGATTGACCCGAGGAATTCCTGGATGGATGGATGGATGGAT
GGATGGATGAATGGATGAATGCCCGAATGAATACGATAATATATTAATAT
TTAACCCTAACTACTTTTTTAGCCATTATATCCGCTCTTATAAAAACCTC
ACTTCCGCTTATTACCCTTACCCTTCCTACCCTTTTTCTCGTTCCCTTTA
CCGATTTGCTCCGGCAGATGACGGCCCAGTCCTAGATATGCGGCGACATA
CTGACCACGCAAGAGATGTACGAGAACGGGACTTGGTTGTGGAGATGAGA
TGATGTAGATAGAGCATGGCTCGGTCGTACGCTGGTATCGCTACCGATAT
TTTATGTAAGCCCCCGCACGCTTTATTCCGTATTACACTCTATTTTACCC
AATATTACCCTAAATTAACGCGGACCGTTCGGGAATGTATAACATTGTAA
ATATGCTATTATACTCCCTATTCTCTCACTATAATTACATAGGTATCCAC
GGACGCAAGAGTAAAAGCGTAATTTAACAGGAGATGTAAATATAGAAACA
GCATTAGGCATAAATCTGGCACGGAAAATATGTATAGATTCCCGTACTAA
ATGAAGCACGTTGCGAAGACGGCAGTGAGATAATTCAAAAGCACGGCGCG
CGGCACAGAGCGCGGGTATATATTAAGCGCGGAATAGAGAAACTCGGAGA
CGCAGACGATAATTAACGCATCGTATCCACTCCAGCAACGGCGTACGATG
ACCCGCAAATTGCGCACGACCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no104_m10.b1 MSMg01no104_m10.b1 CHROMAT_FILE:
MSMg01no104_m10.b1 PHD_FILE: MSMg01no104_m10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:04:09 2005
         (195 letters)



>mm_chr11_72752661_72753255
          Length = 595

 Score =  369 bits (191), Expect = e-107
 Identities = 194/195 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccgaccttggtctcagggtagagttttatgaattagacctagtttgctggcattttag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 395 caccgaccttggtctcagggtagagttttatgaattagacctagtttgctgggattttag 336

                                                                       
Query: 61  taaccatatgaacagagatgtgggctacagttttttgtttttgttttacttgtggggatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 taaccatatgaacagagatgtgggctacagttttttgtttttgttttacttgtggggatt 276

                                                                       
Query: 121 tctggcttgggtatctaacattggcctaagaaggctaagtgggaagtgctgctctcctgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tctggcttgggtatctaacattggcctaagaaggctaagtgggaagtgctgctctcctgc 216

                          
Query: 181 tctcctgcttttgga 195
           |||||||||||||||
Sbjct: 215 tctcctgcttttgga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 195
Length of database: 595
Length adjustment: 8
Effective length of query: 187
Effective length of database: 587
Effective search space:   109769
Effective search space used:   109769
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)