BAC Information

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BAC

Clone NameMSMg01-105G05
Chromosome11 (Build37)
Map Location 44,661,836 - 44,662,246
singlet/doubletsinglet
Overlap geneEbf1
Upstream geneIl12b, Ublcp1, 3732413I11Rik
Downstream geneLOC382510, LOC633082
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-105G05.T7 (MSMg01no105_g05.b1)MSMg01-105G05.TJ (MSMg01no105_g05.g1)
ACCAG319756AG319757
length701700
length of high quality
(start - end)
413 (43 - 455)111 (69 - 179)
definitionCHROMAT_FILE: MSMg01no105_g05.b1 PHD_FILE: MSMg01no105_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:00 2005CHROMAT_FILE: MSMg01no105_g05.g1 PHD_FILE: MSMg01no105_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:05:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCATTGACTCTTACTGGCAAACTGTTGAGCGAGCAGAAAATTGTTTCTTC
TAACAATTCTGGCAAAAGCCGCCGTAATCTGAGATCCAATATCACTAAGT
TGACAAAACACCAAAAACTAGTCCTCACTATAACCTATAGAGCAGGGATT
TTTGATAGCTTGGGTTTTTTTGGAGACACCCAAGTTTATAAAAGATAAAC
TAACCACAGGGAAGCAAATAGCATGTCTTGCACATTTACTCCTATGTACA
GCCTATTTTACCCACAGCCATGGACTATGTAGATACCCCTGACAGTGTAC
GCATCATCTTGGGTTGTAATTTATAACACATACAGGCTGCCTGAAAAGAA
GCCTTTGCTGTTTCACAATGCTCTTCTCCCAATGCCACAGAAATGACAGA
ACGGCATAACCACAGCACAGCGAGCTGCACACTGCACTACACTACATACC
AACATGCCATGCTAAGTATAGGGTGAGGAGAAAGATAGCGTGCGGATATC
TCTAATCCACATAAGTTTATCTCACGCCTGAGAAACTCTGTCCAGGATAA
CTTGGATTCTATTTTAGGACGCTGCGCTTGGAGGGACATCCATTGCCAAA
GACATTATACGCCATGAGAGTCTTTTTCTTAAAATTACCCACCACTGGTT
G
TGATGTGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTATGTAGCCACACTGTTGTTGAACTTATGG
TGAACCTCCTGCCTCACAGCCCCAAATGCTGCGATTACAGGTGTGAGCCA
CTATGTGATGCTTCTGTTCTTGTGTGGTGCTTGTCGAGTGAGGAGAAATC
CCACTAACACATCCATTGCCTCTGCTTTCCTGAAGTTAGGGCATAGATGT
GTGTCCAGGAGGCATGGCTTTTGGAAGTGAAAATGGCGTCAGGCAGGTAC
TGCGAAAGGCAATGCACTATATCCCAGGCTACTCACACACAGGACCCACA
GGCCTTGTGTTCTCTTTCGAAGACGCTTCTAGCTCAGCTCTGATATGAAC
CCCTGGAATGTCTACCAGTGCCCGATGTGGATGTCATCTCTGACTGCATC
CTGTATTTTGCCGCTACTCTGTCTCGACCCTGCAGACCAACTAGCACAGT
TCTGTCTCCCGCGCTATCCCTTCTGCGACTTACGTTGTATGCTCAATACA
TCAACCAATTCTAATTTTTCTTCGATATGCCATTACGGTGCATTCCTATC
ATTTGATTTACTCCCCCCCCATATTAGATCTTTTGTTCTTCTTTCCCTCC
CCTCCGTAACTATATCTCGTCCCTTTCTTACTTTTTATAACACAATTATT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no105_g05.b1 MSMg01no105_g05.b1 CHROMAT_FILE:
MSMg01no105_g05.b1 PHD_FILE: MSMg01no105_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:05:00 2005
         (413 letters)



>mm_chr11_44661630_44662446
          Length = 817

 Score =  714 bits (369), Expect = 0.0
 Identities = 399/411 (97%), Gaps = 4/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   attcattgactcttactggcaaactgttgagcgagcagaaaattgtttcttctaacaatt 66
           ||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 attcattgactcagagtggcaaactgttgagcgagcagaaaattgtttcttctaacaatt 558

                                                                       
Query: 67  ctggcaaaagccgccgtaatctgagatccaatatcactaagttgacaaaacaccaaaaac 126
           |||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 557 ctggcaaaagccaccgtaatctgagatccaataacactaagttgacaaaacaccaaaaac 498

                                                                       
Query: 127 tagtcctcactataacctatagagcagggatttttgatagcttgggtttttttggagaca 186
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 tagtcctctctataacctatagagcagggatttttgatagcttgggtttttttggagaca 438

                                                                       
Query: 187 cccaagtttataaaagataaactaaccacagggaagcaaatagcatgtcttgcacattta 246
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 cccaagtatataaaagataaactaaccacagggaagcaaatagcatgtcttgcacattta 378

                                                                       
Query: 247 ctcctatgtacagcctattttacccacagccatggactatgtagatacccctgacagtgt 306
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 377 ctcctatgtacagcctattttacctacagccatggactatgtagatacccctgacagtgt 318

                                                                       
Query: 307 acgcatcatcttgggttgtaatttataacacatacaggctgcctgaaaagaagcctttgc 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 acgcatcatcttgggttgtaatttataacacatacaggctgcctgaaaagaagcctttgc 258

                                                              
Query: 367 tgtttcacaatgctcttctcccaatg----ccacagaaatgacagaacggc 413
           ||||||||||||||||||||||||||    |||||||||||||||||||||
Sbjct: 257 tgtttcacaatgctcttctcccaatgcccaccacagaaatgacagaacggc 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 817
Length adjustment: 9
Effective length of query: 404
Effective length of database: 808
Effective search space:   326432
Effective search space used:   326432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)