BAC Information

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BAC

Clone NameMSMg01-106D07
Chromosome11 (Build37)
Map Location 62,876,186 - 62,876,775
singlet/doubletsinglet
Overlap geneTekt3
Upstream geneSpecc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2, 2410006H16Rik, BC046404, BC025076, Zfp287, LOC626482, LOC100042766, Zfp286, Trim16, Fbxw10, Fam18b, Cdrt4
Downstream genePmp22, LOC433423, LOC100042799, LOC100041690, LOC654442, LOC668297, Hs3st3b1, Cox10
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106D07.T7 (MSMg01no106_d07.b1)MSMg01-106D07.TJ (MSMg01no106_d07.g1)
ACCAG320356AG320357
length1,2921,309
length of high quality
(start - end)
633 (87 - 719)594 (91 - 684)
definitionCHROMAT_FILE: MSMg01no106_d07.b1 PHD_FILE: MSMg01no106_d07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:18 2005CHROMAT_FILE: MSMg01no106_d07.g1 PHD_FILE: MSMg01no106_d07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCGTGTATTTTNNNTCCATTGGGCGCTATXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTTTGCGTGGGTGTTTTGCCTTTTGAGAATTTACTGTTA
TAAATCTGACTGATAAATTACCATCCTCAAGAGTTTTGATTTTACTGGGT
TATGGAGATTTGTGACAGTTAGCCACAGGGGGTGGATGGATGGGAAGGTC
AGAAGCCTAGGAGCAAGCCAGTAAGTAGCATTCCTCCAGGGTCTCTGCTT
CAGTTCCTGTCTTCAGGTTCCTGCCCTGACTTCTGTCAATGATGAACTGT
AACCTGTATGATGAAGTCAACCCTGTCCTCCCCAAGTTGCTTTCCATTAT
GGCGTTTCTCATAGCAACAAAACTAAACTAAAGCAACACTGGTACCAGAA
GAAGTAGGGTACTGCTGTGATGCATTTGGAACAATGTGCTGGAAAAGCCA
TTGAGTGCTCAGAGATTAATAAGCTGTTGTGGGAGGTTGGAAGCTAACAC
CGAGAGCCATGCAGTTGAGGCCTGGCTTGGGACGTTTTGGGGAACAGTTT
GAGAGTCTCTCCAGGACTCAGTAGGGCCATTTGTGTAGTAAATTAGAGCT
AAGAACAGGAGAAACCGAAACCTTCTACGCTCAGTATGCAGTCAGCTCCG
GCTAAAGAATCAGCTGAGATTAATAAAAGACCATTGTGGCGGAATCATCT
GGGAATACTTCCTTAGGGTCAGCGCACAGAAGCTGTGGGCCAGAGTGGGA
CCAGGCTGAATCTCAGGCTGGAACTCAGCAATGTGTCAGAGTCTCCCAGG
GGGTCCTGTTTTTGAAGGCATGAGGGTGTCATGGAGAGCGGCTGGGCCTG
GATTGAATATAAGTCTGAGAGCAAGCCAGCAAGCAGTGGGTATCCCGGGT
CGCGTTTTTAGTTCCTGTCTTTAGGGCCCCCCGTTGAATTTCCCTCAACA
AAAGATTCTTTCCTGTTAAATGAAAGCCACCCTTAATCTCCCCCCTGCTT
TTGGAATTTGGGGGTTTGTCCAATTACTTGTTAACCCACCCTGTATCGGA
TTTCTTAATCTTGGTTCTATAAATTTTGGAAGATATGTGGGGTAAAATAT
TTTTTTTTTCCTTCTCTTAATTCAGGTGCAATTTAAATAATTAAAATTGT
GTGGGTCTAGGATCGCCTCTCCACTTCTTATGTGAAATACTTCCTTTCTT
GCTTTTAAATAGATCATTCGTCTCCACCTTCTTCTATTTATTTGTCTCTT
CGTCTTGTTTATAATTCTTTCTATTAACTCTTGGNGTGGTGN
NCCATTTTTTTTTTNTTTCATGGGAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTATGCATTTATTTGTT
TGTTTAAAGATAATTAAGTCTCCCCTTGATCTTATTTAACCTTAAAGCTG
AAGTGTTTCATGTTGAAATTCAAGTCATGGCTTCTAATTTTGGTGTTTGT
TTAAAAGACAAAATGTTTATATGATATGAAGAGAAGCTCTAGCTAAGTGT
GGTATTTATTAACATGTATCTCTGGTCCCATCTGACCCTGGGTTAGCTAC
TGGAACCAGTGGACCTGGTTCTAGTCCTGTGGGTCTGTCTATGAAGCCGT
CAAGCCTGTGCCTGCCACTGATCTGAGGCAGGGCGTGGAGTAAGGTAATG
CAGTTTCTGGACTCGTGTCTTCTGGGGATGTTCTGTAAAGGTTTTTGCTC
TTTTAAATATTTATGATCCTAAAGTCTTGACTAAAATATGCCGAGAAAAT
ACATCCATTCAAGTCAAGCTCATCTTCTGAATTGTAAATGGATCTTTCCA
GTATTTGTATTCTTGGTGGGGTCCATTGTATCTTTAGCAAATCAATATTT
ATAGTCGAGTACTATAGCACTTTCGGTATGTTAATACCTGTTGATCACAC
ATTAAATGAATAAAGCCCAACACTGTTTGACTTTGTAGCACATCTCCTTT
CTATTGTTAGTAACAAAATATAATGTATTTATCTATGTTTACTTATTGGA
ACCCTGACTGCCCTGAAACTTGCTATGTATACCAGGCTTGGTCCTAAAAT
TCATAAGAATCCACTTGCCTTAACCTTTCTAAATACTGGTAATTAAAATT
ATGCACGTTCACATCTGTTATCCAAATGTTATTTTAATAAATCAAAAAGC
CCTTGGTTCTGATCTAAGGGCAATTGATCCCCATGCCTTACTTTCTAACT
GGTCTTTCCAAAAGAACCTTATTGGAATTTCCATAGCATACCTTAAATAC
TATTTACTTTGTTATTCAAGTTTTTATTAAGTGTTTTTTTCAACATTTCC
TTTGTATATGTGCCTGAATTCTTAATTTTTGTAAAATTTTAATACTTTTT
AATTAAACATATATTTTTCTAGTTATACTCATAAATTTTCTTTTTCTTGG
TTTGTATTTTTATCCTAAAATACATTTTTTCGTACTTAAAATTTCTTTCT
CTCTTACTTATTTGTCGACTTCTCTCTAGCTTAATTTTAATCCCTCTCGT
TGGTATTATTTTATAATNATTCCTATATATTTCTTTCGTACTTATTTCTT
CTTTGCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_d07.g1 MSMg01no106_d07.g1 CHROMAT_FILE:
MSMg01no106_d07.g1 PHD_FILE: MSMg01no106_d07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:18 2005
         (594 letters)



>mm_chr11_62875982_62876975
          Length = 994

 Score = 1094 bits (566), Expect = 0.0
 Identities = 584/590 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   tttgtttgtttaaagataattaagtctccccttgatcttatttaaccttaaagctgaagt 64
           |||||||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct: 205 tttgtttgtttaaagataattaagtctctccatgttcttatttaaccttaaagctgaagt 264

                                                                       
Query: 65  gtttcatgttgaaattcaagtcatggcttctaattttggtgtttgtttaaaagacaaaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtttcatgttgaaattcaagtcatggcttctaattttggtgtttgtttaaaagacaaaat 324

                                                                       
Query: 125 gtttatatgatatgaagagaagctctagctaagtgtggtatttattaacatgtatctctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttatatgatatgaagagaagctctagctaagtgtggtatttattaacatgtatctctg 384

                                                                       
Query: 185 gtcccatctgaccctgggttagctactggaaccagtggacctggttctagtcctgtgggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtcccatctgaccctgggttagctactggaaccagtggacctggttctagtcctgtgggt 444

                                                                       
Query: 245 ctgtctatgaagccgtcaagcctgtgcctgccactgatctgaggcagggcgtggagtaag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||
Sbjct: 445 ctgtctatgaagccgtcaagcctgtgcctgccactgatctgaggcagggcgtggagcgag 504

                                                                       
Query: 305 gtaatgcagtttctggactcgtgtcttctggggatgttctgtaaaggtttttgctctttt 364
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gtaatgcagtttctggacttgtgtcttctggggatgttctgtaaaggtttttgctctttt 564

                                                                       
Query: 365 aaatatttatgatcctaaagtcttgactaaaatatgccgagaaaatacatccattcaagt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aaatatttatgatcctaaagtcttgactaaaatatgccgagaaaatacatccattcaagt 624

                                                                       
Query: 425 caagctcatcttctgaattgtaaatggatctttccagtatttgtattcttggtggggtcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 caagctcatcttctgaattgtaaatggatctttccagtatttgtattcttggtggggtcc 684

                                                                       
Query: 485 attgtatctttagcaaatcaatatttatagtcgagtactatagcactttcggtatgttaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 attgtatctttagcaaatcaatatttatagtcgagtactatagcactttcggtatgttaa 744

                                                             
Query: 545 tacctgttgatcacacattaaatgaataaagcccaacactgtttgacttt 594
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tacctgttgatcacacattaaatgaataaagcccaacactgtttgacttt 794


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)