BAC Information

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BAC

Clone NameMSMg01-106F03
Chromosome11 (Build37)
Map Location 120,730,241 - 120,921,120
singlet/doubletdoublet
Overlap geneCcdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b
Upstream gene4932417H02Rik, Chmp6, Baiap2, Aatk, Azi1, 2410002I01Rik, 1810043H04Rik, 1810073N04Rik, 2810410L24Rik, LOC100042332, LOC100043384, LOC100043389, Bahcc1, Actg1, Fscn2, 2310003H01Rik, Nploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn
Downstream geneSectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l, Rab40b, BC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106F03.T7 (MSMg01no106_f03.b1)MSMg01-106F03.TJ (MSMg01no106_f03.g1)
ACCAG320440AG320441
length1,2741,291
length of high quality
(start - end)		534 (129 - 662)527 (132 - 658)
definitionCHROMAT_FILE: MSMg01no106_f03.b1 PHD_FILE: MSMg01no106_f03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:34 2005CHROMAT_FILE: MSMg01no106_f03.g1 PHD_FILE: MSMg01no106_f03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:06:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,730,241 - 120,730,763)(120,920,594 - 120,921,120)
sequence
NCCAATTTTTTTTTAAACCATTGGGCGCTATAGACTCCTATAGGGAGAGG
ATCCGCGGAATTCATTATGTTGGACGGAGGCCTGTAAGGGGGATGGCAGC
TTTCCTGAGGTTTCAAGTGGGCCATAGTATGGATTCCTTGCTGTCCAATA
AAGAATAAAATTTAAACCCAGGCTTATGTGTGAGAGCCATGTTTTCTTCC
TAGAATGATCTCCTTACTATGGATATTGTCAAATACCAAAGGATGCTGGG
TGAGCTGTGGTGAGGTGTAAAGTCTACATTCAGCACAAGAGCAAAGGGAC
AGAGGAGCAAGTAGAAGGTGAGAATGGGAAGGCTCTAACCACAGCATGCC
AGCAGGCAAACTGAGGGGCAAAAGCAAATTCAGAAGGGATGTGAGTGTGT
TTCATATAGTTGTTAATTGCAGAAAATAAAAAACAGAAGCCAGCATATTA
GATTAAAAATAACCAAAAAGGATTTTGAAAATCTCTTCTAGATAACTCAA
GGGTGAAATAGAAAGAACCCTGAGCCCACAAGAACACGTGTCTTGAGATT
AGTTATTTGGTAACTATGTCCTGTATGTTTCTAGGACATGTTTGAAGTCA
CAGTCACATGGGAATTTACACCCTAAAACATGCAATGGCAAGCCCAGCGT
TTAATCTCAGCACTGGGGACACAGAGGCAGGTAGATCACTGAGTTTGAGG
CTAGCAAATTCCAGGACAGCCAGGGCCACTCAGAAACCATGTAATAGGTG
AACTTGAAGGAACCAAGTTGAATGCTTATCACCTCATCTAGACACTGGGA
AGAGATCTTTTAGATCGACTCAAAAAAGGAATAGATGTGAGGTGCTTACT
GATTACTCCCAGGGAGTCTTCTTACCACTTTCATAATCCTTCTGAAAACA
TAAGAGGGGGTATACTCTCTTAATCACCTCACTATCAATACTTTTTCTGT
ACAGATTCTTTCCACTAAATCTTCTCTCTTTTTTATTTCTTATTTTTATC
TTATTTTATTTTCTTTGATTTTATAAAATTTTACCTTCCTTTAAACCCCT
TTTTTCATTTTTTTTAATTTTTTCTCTTCTCTCTATTTTTTAATTCTTTT
CTTTTTTTTATACTTATATATCACTTGGATATATTATTATATTTTCTCTT
CTTCCTATAATATTATCTTAATACATATTATTTCACTTTTATTTATTCTA
TCTATATTTACTTCATCTACTAACCATTCTTATACTTCTTTCTATTGGTT
TCTATTTATTGGTTTAGTATATAN

NCCGGGATTTTTNNTGACATGTGAGNCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTATCCTCCTTTTCTTTC
CCAAGTCCTCATTGTTTCCTCCTTTTTTCTCAGAAAGGGAAGTACACAGT
GCTGGAGGTGGACATAGCCACAGGCCAGACTTGAGGCCATTGGCCGGGTC
TGCTGTGAGTGCCGGCTCTCAAAATCCAGAGAGCCCGGTCACTGACATCT
GCATGCCATGACCCAGGGTGCCACTCTCTGGGCTGAGCTGGAGCTAGACT
CTCAGAAGGTCAGGGCTGACAAGGGACAAATGGCAGAATATGCACACTGG
AGGGTGAACTCAAACACAGGCCTCTTAGAGCCCAGAGGATCCATCTGACC
TGGTGGAAAGAGAGTATCTACCTGTGATTCTCAGACAGAAGGTCCAAAAC
ACCCAAAGAAGAAAAGCATAGACTATAATGTTGTCTGGGGTTCTGGTGAA
GACAAAACTCCTCTGTATGAAGGGGCCCAGGGCTCAGAGAGGGAAAGACT
GATGGATTGATGTTTCTTCTACCCCCTTGACTGGGCTGCTCCCAAATCCA
TTTCTAACTGGGCTGCTAAGAGAGGCGAAGTTAGGCTACCGCAGAGAAAG
AGGGGCTAGCCATCCAATTTCAGAAACAGCTTTGAGAACCGGGAAGTGTC
TCACGGGACAGCTCAATGCTTGCCATTTTCCCTGCTAGCCAATCTCAGTC
CACCGGGTCCTTTGTGTCCACAGGGCAAAACTAAAGGTCACCCTTATAGT
CCGGTCAACCTGCCCAGCTTTAATGATGCCAGGAACTTGAATCTTGGTAC
CCATACCTTTAGTCCTTCTGGGAAGGAAATTTTGGTCCAATGTGCGGATT
TCACCCATACTTGTGTTTTTCACTTACTCCTTTGACTGTGGTGGCCCGAC
CGTACACATAATCCTTAGTGTCCTTTATTAAAGCTCTTATCTCCCCCTCC
CAGGTAAATTTTCCTTGAATATCTATAATAAATTAACTTTTGACCCTTTC
CGGGCGGTCCTCCCCTGGTGATGACTCTCATTGTACAATCATGTTTATAT
CATCCCTCGGTTTTGATATTGGCATCTTTAATTTTCTATAACATGGTCCT
CCGGTATTTTGTACTCCTCTATAAAACTCCTCTTGTGTCCCTTCGCTCCA
TCCCTTTTCTGTTAATATTTAATCTTTACCATCTTTCTCTGTGTGATGTC
ATCCTTATTATAACATTCGCACTTCTTCCATCTCTTATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_f03.b1 MSMg01no106_f03.b1 CHROMAT_FILE:
MSMg01no106_f03.b1 PHD_FILE: MSMg01no106_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:34 2005
         (534 letters)



>mm_chr11_120730041_120730974
          Length = 934

 Score =  980 bits (507), Expect = 0.0
 Identities = 519/523 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atggattccttgctgtccaataaagaataaaatttaaacccaggcttatgtgtgagagcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atggattccttgctgtccaataaagaataaaatttaaacccaggcttatgtgtgagagcc 260

                                                                       
Query: 61  atgttttcttcctagaatgatctccttactatggatattgtcaaataccaaaggatgctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgttttcttcctagaatgatctccttactatggatattgtcaaataccaaaggatgctg 320

                                                                       
Query: 121 ggtgagctgtggtgaggtgtaaagtctacattcagcacaagagcaaagggacagaggagc 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgagctgtggtgagatgtaaagtctacattcagcacaagagcaaagggacagaggagc 380

                                                                       
Query: 181 aagtagaaggtgagaatgggaaggctctaaccacagcatgccagcaggcaaactgagggg 240
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 381 aagtagaaggtgagaatgggaaggctctaaccacagcacgccagcaggcaaactgagggg 440

                                                                       
Query: 241 caaaagcaaattcagaagggatgtgagtgtgtttcatatagttgttaattgcagaaaata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 441 caaaagcaaattcagaagggatgtgagtgtgtttcatatagttgttaacagcagaaaata 500

                                                                       
Query: 301 aaaaacagaagccagcatattagattaaaaataaccaaaaaggattttgaaaatctcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaaaacagaagccagcatattagattaaaaataaccaaaaaggattttgaaaatctcttc 560

                                                                       
Query: 361 tagataactcaagggtgaaatagaaagaaccctgagcccacaagaacacgtgtcttgaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagataactcaagggtgaaatagaaagaaccctgagcccacaagaacacgtgtcttgaga 620

                                                                       
Query: 421 ttagttatttggtaactatgtcctgtatgtttctaggacatgtttgaagtcacagtcaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttagttatttggtaactatgtcctgtatgtttctaggacatgtttgaagtcacagtcaca 680

                                                      
Query: 481 tgggaatttacaccctaaaacatgcaatggcaagcccagcgtt 523
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgggaatttacaccctaaaacatgcaatggcaagcccagcgtt 723


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 934
Length adjustment: 10
Effective length of query: 524
Effective length of database: 924
Effective search space:   484176
Effective search space used:   484176
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no106_f03.g1 MSMg01no106_f03.g1 CHROMAT_FILE:
MSMg01no106_f03.g1 PHD_FILE: MSMg01no106_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:06:35 2005
         (527 letters)



>mm_chr11_120920394_120921320
          Length = 927

 Score =  996 bits (515), Expect = 0.0
 Identities = 524/527 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaagggaagtacacagtgctggaggtggacatagccacaggccagacttgaggccatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agaaagggaagtacacagtgctggaggtggacatagccacaggccagacttgaggccatt 668

                                                                       
Query: 61  ggccgggtctgctgtgagtgccggctctcaaaatccagagagcccggtcactgacatctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ggccgggtctgctgtgagtgccggctctcaaaatccagagagcccggtcactgacatctg 608

                                                                       
Query: 121 catgccatgacccagggtgccactctctgggctgagctggagctagactctcagaaggtc 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tatgccatgacccagggtgccactctctgggctgagctggagctagactctcagaaggtc 548

                                                                       
Query: 181 agggctgacaagggacaaatggcagaatatgcacactggagggtgaactcaaacacaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 agggctgacaagggacaaatggcagaatatgcacactggagggtgaactcaaacacaggc 488

                                                                       
Query: 241 ctcttagagcccagaggatccatctgacctggtggaaagagagtatctacctgtgattct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 ctcttagagcccagaggatccatctgacctggtggaaagagagtatctacctgtgattct 428

                                                                       
Query: 301 cagacagaaggtccaaaacacccaaagaagaaaagcatagactataatgttgtctggggt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cagacagaaggtccaaaacacccaaagaagaaaagcatagactataatgttgtctggggt 368

                                                                       
Query: 361 tctggtgaagacaaaactcctctgtatgaaggggcccagggctcagagagggaaagactg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tctggtgaagacaaaactcctctgtatgaaggggcccagggctcagagagggaaagactg 308

                                                                       
Query: 421 atggattgatgtttcttctacccccttgactgggctgctcccaaatccatttctaactgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 atggattgatgtttcttctacccccttgactgggctgctcccaaatccatttctaactgg 248

                                                          
Query: 481 gctgctaagagaggcgaagttaggctaccgcagagaaagaggggcta 527
           | |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 247 gttgctaagagaggcgaagttaggctaccggagagaaagaggggcta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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