BAC Information

Click to search

BAC

Clone NameMSMg01-106K08
Chromosome11 (Build37)
Map Location 14,321,983 - 14,459,019
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC432535
Downstream gene1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-106K08.T7 (MSMg01no106_k08.b1)MSMg01-106K08.TJ (MSMg01no106_k08.g1)
ACCAG320672AG320673
length1,2701,298
length of high quality
(start - end)		699 (82 - 780)605 (90 - 694)
definitionCHROMAT_FILE: MSMg01no106_k08.b1 PHD_FILE: MSMg01no106_k08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:23 2005CHROMAT_FILE: MSMg01no106_k08.g1 PHD_FILE: MSMg01no106_k08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:07:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,458,648 - 14,459,019)(14,321,983 - 14,322,587)
sequence
TATTTTAACACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAA
TTCTCCCTATTTTCTCACTCCTCATTTTATTTCAGTCCATTCTGCATTAT
TTCCTAAGATTTGCAAGGGGGTAGTATTAATGAGTTATTTAAGGCAAGTC
CTCATCTGTTATTTATTCTTAACATTTTGGGCAGTGATGAGTCTCCATAT
TACTGTTGATCACTGGAAAGACAGTCTCTTCTTATTAGGGTTAAGAACAA
CACTTGTAGGAAAGAAAATTGGCTACACAGCTGAATATCAAGAGCAGTTT
TCTGCATGAGGCCCATGACATGGCTCTTGCCTAGGCCTGACACAGCAAGC
TTGGGTTCTTATCTGTGGAACAGCCCTCAAATCTAATTAGAGATGGTCAG
TTTTCCCATATTGTTATTTTGCCACTACAGTTCACATGGGTCTATCTTGT
CTTTTTTTTTTATTAGGTATTTTCCTCGTTTACATTTTCAATGCTATCCC
AAAGGTCCCCCATACCCACCCCCCCTATTCCCTACCCACCCACTCCCCCT
TTTTGGCCCTGGCGTTCCCCTGTAATGAGGCATATAAAGTTTGCAAGTCC
AATGGGCCTCTCTTTGCAGTGATGGCCGACTAGACCATCTTTTGATACAT
ATGCAGCTAAAGACAAGAGCTCCCGGGTACTGGTTAGTTCATATTGTTGT
TCCACCTATAGGGTTGCAGTTCCCTTTAGCTTCTTGGGTAATCTTGAATT
TTATGCGTTTGGCAAGTTGTATCTTATATCTTGGGTATCCTAAGTTTCTG
GGCTAATATTCACTTATCAGTGAGTACCTATTGTGCGAGTTCCTTTGTGA
TTGGCTTACTTCTCTCCGGATGATACCCTCCAGGTTCATCCATTTGCCTA
GGAATTTCCAAAATTTATTTTTTTTTAATACCTGAATTAGTAATTCCTTG
GTGTAATTGATCCCCATTTTCCGTGGCCCTTTCCTTGTTGAAGGAACCTA
TTTTATTTGTTTAGTACAATACATTTCATATTTTTTCTTCCCAATTGTTT
TGCAAACACTACTGTGGCTTTTTTTAAAAATAATCCCCAGGGGTAAAATC
TTCCTTGCTAATTTTTCCCTTTGAATTGTGGTCAAAAATCTCCTGTTAAT
GTCTTTTTTTAGTTTTGATAATAATACTTGGTTCCCATTCTTGTTCTTTT
ATACTATAAAATATATTCTATTCTTCTCCTCTTCCTAAAAGACATNTCCC
TATTTGTATATATATACTCC

CCCTTTCTTTTTTNNTCCATGGNAGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCATTAAGGGGAATTGTCACC
TCTCCATGCTTCTCTAGTTACCGTGATTTCCATCAATTGCAAGGAGCAGT
TTGTTATTTCATGTGTCCCTGTAGCAATGCCTGCTCTAAACTTAAAAAAC
ACATATGTGCAAAAAATCATGTTATGAACCTTCTTTCTTTAGCTGATTTG
ATTTAAATATATTTTTTAATGATTTTATTTGTTTACATTTCAAATGTTGT
TCCCTTTTCTGGTTTCCCCTACATGAAGCTCTCACCCCATACCCCTCCCC
TTTGCAACTAACAGTGTTTCCCAACAAATCTACCCACTCCTGCCTCACTC
CTCTAGCATCCCCTTTATCTAGGGTATTAAGCCTCCACAGGACCAAGTGC
CTCCCCTTCCACTGAAACCAGATGAGGCAGTCCTCTGCTACTTATATAGC
AGGAGCCATGGACAAGTCCATGTATACTCTTTGGTTAGTGCCTTACTCCC
TGGGCTCTGTGAGGGGTCTGGTTAGTTGATACCATTGCTCTTCCTATGTG
GTTGCAATCCCCTTCAGCTCCTTCGGTCCTTCCAATAACTCTTGCATCGG
GGGCCCCAAGCTCAGTTCAATGGTTGGCTATGAGTATCTACAACTGTCTT
AGTCAGGTGCTGGCAGAGCCTTCCAGAGGACTCCCATTCCAGGTTACTGT
TTGCAAGCACATCTTGCCATGCACAATAGTGTCTGGGTTTGCTGTTTGCA
GATGGGATAGATTCCAATATGTGGCAGTCTCTGAGTAGCCTTCCTTTCAG
TCTATGCTCCATTTTAATCCCTGCACTTTTTTTATATTGCCCCAACTCTA
TGTTCAAAAAATGTGAAATGAATTGGTGGCCCCATCACTACACCGGGCTG
ATGGCATTGTTTGTCTACTGAAAGTGGTTCAATTAAACTTTAATTTCCCC
TGCAATTGAACAATAACCCCTAATGTCCCTCCCTTTTTGAATCCTTCTGA
ACCCCCCTTGCATCCCCTAAAGGCTTGGAAATTTTCCTAAAGGGTTTACC
TTCTATTCTCAGATCCCCCCCTCTGGTTATACAAAAATAACTTCTTTCTC
CTCTGGGAAACTTGTGCCTTTTTCTTCCTCCATATTTCCCCAAATTGTAT
CTCTAAACCCCATAAAAACCTTCTTCCTTCTCTTTTTCTAATAAAAAATA
CTCTCTTCCCAAACTTCGTGCTTTAATGTTATCTTGAGAATACACGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no106_k08.b1 MSMg01no106_k08.b1 CHROMAT_FILE:
MSMg01no106_k08.b1 PHD_FILE: MSMg01no106_k08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:23 2005
         (699 letters)



>mm_chr11_14458623_14459721
          Length = 1099

 Score =  665 bits (344), Expect = 0.0
 Identities = 365/372 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagtccattctgcattatttcctaagatttgcaagggggtagtattaatgagttattta 60
           |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct: 397 tcagtccattctgcattatttcctaagatttgtaagggggtagtgttaatgagttattta 338

                                                                       
Query: 61  aggcaagtcctcatctgttatttattcttaacattttgggcagtgatgagtctccatatt 120
           ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 337 aggcaagtcctcatctgctatttattcgtaacattttgggcagtgatgagtctccatatt 278

                                                                       
Query: 121 actgttgatcactggaaagacagtctcttcttattagggttaagaacaacacttgtagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 actgttgatcactggaaagacagtctcttcttattagggttaagaacaacacttgtagga 218

                                                                       
Query: 181 aagaaaattggctacacagctgaatatcaagagcagttttctgcatgaggcccatgacat 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 217 aagaaaattggctacacagctgaatatcaagagcagttttctgaatgaggcccatgacat 158

                                                                       
Query: 241 ggctcttgcctaggcctgacacagcaagcttgggttcttatctgtggaacagccctcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 157 ggctcttgcctaggcctgacacagcaagcttgggttcttatctgtggaacagccctcaaa 98

                                                                       
Query: 301 tctaattagagatggtcagttttcccatattgttattttgccactacagttcacatgggt 360
           |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct: 97  tctaattagagatggtcagttttcccttattattattttgccactacagttcacatgggt 38

                       
Query: 361 ctatcttgtctt 372
           ||||||||||||
Sbjct: 37  ctatcttgtctt 26


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1099
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1089
Effective search space:   750321
Effective search space used:   750321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no106_k08.g1 MSMg01no106_k08.g1 CHROMAT_FILE:
MSMg01no106_k08.g1 PHD_FILE: MSMg01no106_k08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:07:23 2005
         (605 letters)



>mm_chr11_14321783_14322787
          Length = 1005

 Score = 1131 bits (585), Expect = 0.0
 Identities = 600/605 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattgtcacctctccatgcttctctagttaccgtgatttccatcaattgcaaggagcag 60
           |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 201 gaattgtcacctctccatgcttctctagttaatgtgatttccatcaattgcaaggagcag 260

                                                                       
Query: 61  tttgttatttcatgtgtccctgtagcaatgcctgctctaaacttaaaaaacacatatgtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 261 tttgttatttcatgtgtccctgtagcaatgcctgctctaaacttaaacaacacatatgtg 320

                                                                       
Query: 121 caaaaaatcatgttatgaaccttctttctttagctgatttgatttaaatatattttttaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaaaatcatgttatgaaccttctttctttagctgatttgatttaaatatattttttaa 380

                                                                       
Query: 181 tgattttatttgtttacatttcaaatgttgttcccttttctggtttcccctacatgaagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgattttatttgtttacatttcaaatgttgttcccttttctggtttcccctacatgaagc 440

                                                                       
Query: 241 tctcaccccatacccctcccctttgcaactaacagtgtttcccaacaaatctacccactc 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccaccccatacccctcccctttgcaactaacagtgtttcccaacaaatctacccactc 500

                                                                       
Query: 301 ctgcctcactcctctagcatcccctttatctagggtattaagcctccacaggaccaagtg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgcctcactcctctagcatcccctttatctagggtattaagcctccacaggaccaagtg 560

                                                                       
Query: 361 cctccccttccactgaaaccagatgaggcagtcctctgctacttatatagcaggagccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctccccttccactgaaaccagatgaggcagtcctctgctacttatatagcaggagccat 620

                                                                       
Query: 421 ggacaagtccatgtatactctttggttagtgccttactccctgggctctgtgaggggtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggacaagtccatgtatactctttggttagtgccttactccctgggctctgtgaggggtct 680

                                                                       
Query: 481 ggttagttgataccattgctcttcctatgtggttgcaatccccttcagctccttcggtcc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggttagttgataccattgctcttcctatgtggttgcaatccccttcagctccttcggtcc 740

                                                                       
Query: 541 ttccaataactcttgcatcgggggccccaagctcagttcaatggttggctatgagtatct 600
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttccaataactcttgcatcaggggccccaagctcagttcaatggttggctatgagtatct 800

                
Query: 601 acaac 605
           |||||
Sbjct: 801 acaac 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |