Query= MSMg01no106_o17.b1 MSMg01no106_o17.b1 CHROMAT_FILE:
MSMg01no106_o17.b1 PHD_FILE: MSMg01no106_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:01 2005
(507 letters)
>mm_chr11_12776181_12777086
Length = 906
Score = 932 bits (482), Expect = 0.0
Identities = 498/504 (98%), Gaps = 3/504 (0%)
Strand = Plus / Plus
Query: 5 gaattccttccactcggcaggttgccttctgatgcaattgataattcccattgctataca 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttccacttggcaggttgccttctgatgcaattgataattcccattgctataca 264
Query: 65 ggactcatttgtcagatgttggtcttaatgtccatgtgggtcctgtccagaaggaccttt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggactcatttgtcagatgttggtcttaatgtccatgtgggtcctgtccagaaggaccttt 324
Query: 125 cttgtgcaaattactttaccaagctttgtatgtatttcactcacattcttctagtccaat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cttgtgcaaattactttaccaagctttgtatgtatttcactcacattcttctagtccaat 384
Query: 185 gttttctgcatgggagattttaaacacaattcttcattaaattgagttttcagttactag 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gttttctgcatgggagattttaaacacaattcttcattaaattgagttttcagttactag 444
Query: 245 tatgaattttttgtctcctgatatgcct-aaatcttaaaaaaaaaacacaatatgtctgt 303
|||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 445 tatgaattttttgtctcctgatatgccttaaatcttaaaaaaaa--cacaatatgtctgt 502
Query: 304 taaatccatttcccttctctacctatgtttccaataccttcaaatttaactccaaacatt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 taaatccatttcccttctctacctatgtttccaataccttcaaatttaactccaaacatt 562
Query: 364 gcaatatattcctgttcgttttatttttactccaagtgggtaatccttgaatttactctc 423
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gcaatatattcctgtttgttttatttttactccaagtgggtaatccttgaatttactctc 622
Query: 424 cacatatggctaaggagctctctttctacaacagtattctgattgcatcaatattttgct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cacatatggctaaggagctctctttctacaacagtattctgattgcatcaatattttgct 682
Query: 484 cacaatgtttttccttgacatttc 507
|| |||||||||||||||||||||
Sbjct: 683 caaaatgtttttccttgacatttc 706
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 906
Length adjustment: 10
Effective length of query: 497
Effective length of database: 896
Effective search space: 445312
Effective search space used: 445312
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no106_o17.g1 MSMg01no106_o17.g1 CHROMAT_FILE:
MSMg01no106_o17.g1 PHD_FILE: MSMg01no106_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:02 2005
(609 letters)
>mm_chr11_12949522_12950529
Length = 1008
Score = 1100 bits (569), Expect = 0.0
Identities = 599/609 (98%), Gaps = 1/609 (0%)
Strand = Plus / Minus
Query: 1 tctcctaaacagatgctcacaattaactctaaaatggtgctgataagctgcttaatagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 tctcctaaacagatgctcacaattaactctaaaatggtgctgataagctgcttaatagct 749
Query: 61 catgcacttgggaccttgactgttatatttttttaagggatagtggtgcagtcagctctg 120
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct: 748 catgcactt-ggaccttgactgttatatttctttaagggatactggtgcagtcagctctg 690
Query: 121 caaaggcaatcacatagctttgaaaagtcataaaatatcatatatttaatgaacttttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 caaaggcaatcacatagctttgaaaagtcataaaatatcatatatttaatgaacttttca 630
Query: 181 tttaatttgcataacttaaaaactccagaatttgtctggagcagaatttgctacaagtct 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 629 tttaatttgcataacttaaaaactccagactttgtctggagcagaatttgctacaagtct 570
Query: 241 ctcaataatgctctttcaagaaactggaatgctgtcaaagtaactgtcaagtcagtttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 ctcaataatgctctttcaagaaactggaatgctgtcaaagtaactgtcaagtcagtttgt 510
Query: 301 gggataaagggcgttgggaaaaggcactcataacaaatatttctctactgctttcctata 360
|||| |||||| |||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct: 509 gggagaaagggggttgggaaaaggcactcataacgaatatttatctactgctttcctata 450
Query: 361 gccaagacaagcaagtactataggctacatcattctcctttaagaattgtgcatatccat 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 449 gccaagacaagcaagtactataggctacatcattctcctttaagaactgtgcatatccat 390
Query: 421 tgtcaaataggatctgtaacacttgcattagagagaacatggcttgcaggtagaatgggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgtcaaataggatctgtaacacttgcattagagagaacatggcttgcaggtagaatgggg 330
Query: 481 caaactgttgggaatattatacattttagttttcctgcttagtgcaattgtagcaaagac 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 caaactgttgggaatattatacattttagttttcctgcttagtgcaattgtagcaaagac 270
Query: 541 tatcaacttagaaaggactacagatacacaactagaggacctttaattgatccctggaaa 600
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tatcaacttagaaaggaccacagatacacaactagaggacctttaattgatccctggaaa 210
Query: 601 tttccaaac 609
|||||||||
Sbjct: 209 tttccaaac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1008
Length adjustment: 10
Effective length of query: 599
Effective length of database: 998
Effective search space: 597802
Effective search space used: 597802
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
