Query= MSMg01no107_b06.b1 MSMg01no107_b06.b1 CHROMAT_FILE:
MSMg01no107_b06.b1 PHD_FILE: MSMg01no107_b06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:26 2005
(336 letters)
>mm_chr11_72612654_72613389
Length = 736
Score = 607 bits (314), Expect = e-178
Identities = 331/338 (97%), Gaps = 4/338 (1%)
Strand = Plus / Minus
Query: 1 ggtaggacacacctttgatcccaacacttgggaggcagaggtagtcagatctttgtgagt 60
||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 673 ggtaggacaaacctttgatcccaatacttgggaggcagaggtagtcagatctttgtgagt 614
Query: 61 taaaggtcagcgagggctacacatcaagttccaggacagccaggactacagagaggccct 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 taaaggtcagcgaggtctacacatcaagttccaggacagccaggactacagagaggccct 554
Query: 121 ttctcaaaacaacaaaaacaatagtaaaactccaatttccaaactccttgctaggctact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttctcaaaacaacaaaaacaatagtaaaactccaatttccaaactccttgctaggctact 494
Query: 181 ggactcaaattcttggcccctctccttcggcctcatctattctcccgaatttatgaccta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggactcaaattcttggcccctctccttcggcctcatctattctcccgaatttatgaccta 434
Query: 241 gccaactagtctcatttactctcttcctcagtaatt--attcctcaaatttagctaacta 298
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 433 gccaactagtctcatttactctcttcctcagtaattaaat--ctcaaatttagctaacta 376
Query: 299 taaggccatggaatgaagcgctctcccagattttctta 336
||||||||||||||||||||||||||||||||||||||
Sbjct: 375 taaggccatggaatgaagcgctctcccagattttctta 338
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space: 237729
Effective search space used: 237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no107_b06.g1 MSMg01no107_b06.g1 CHROMAT_FILE:
MSMg01no107_b06.g1 PHD_FILE: MSMg01no107_b06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:08:26 2005
(627 letters)
>mm_chr11_72548566_72549591
Length = 1026
Score = 1158 bits (599), Expect = 0.0
Identities = 620/629 (98%), Gaps = 5/629 (0%)
Strand = Plus / Plus
Query: 1 ttatgaaagaacatctctcatgacttcctaccc--tatttgggtgattgcttagctacag 58
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 201 ttatgaaagaacatctctcatgacttccta---aatatttgggtgattgcttagctacag 257
Query: 59 gaattgccaagatagtgttgatgagtgttctagggtgatttaatcttccattctgaattt 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gaattgccaagatagtgttgatgagtgttctagggtgatttaatcttccattctgaattt 317
Query: 119 gtgaattgtctggaagtatgtggatcacagtgtgaatatagcagacttcaaaaagagtgc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gtgaattgtctggaagtatgtggatcacagtgtgaatatagcagacttcaaaaagagtgc 377
Query: 179 agcatgctgtagtgtacagagcacagacttgcttgaatcctggcttctatgttgctttga 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 agcatgctgtagtgtacagagcacagacttgcttgaatcctggcttctatgttgctttga 437
Query: 239 tgacagtcacttgtccatagtgtcatcttttcttgtgtgtaaatggaaagggatctttct 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tgacagtcacttgtccatagtgtcatcttttcttgtgtgtaaatggaaagggatctttct 497
Query: 299 gctttaccaggcttttagcacagtgagacaggattggggtgtccctcatactatgactac 358
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gctttagcaggcttttagcacagtgagacaggattggggtgtccctcatactatgactac 557
Query: 359 ctgttgctgatagagtaaacacagtggcctttaccttgcccgagcagtggagtgccagaa 418
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 558 ctgttgctgatagagtaaacacagtggccttcaccttgcccgagcagtggagtgccagaa 617
Query: 419 tcagaccccatagggaattgtcttttctttgaggtcccactgaaacactggctatctaga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 tcagaccccatagggaattgtcttttctttgaggtcccactgaaacactggctatctaga 677
Query: 479 gcctggccccagacctgcagtgctcctgcctctgcctcctgtgttctgggtttcagatgt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 678 gcctggccccagacctgcagtgctcctgcctctgcctcctgtgttctgggttttagatgt 737
Query: 539 gtgctaacctatccttctgaggaattacttgacagtgccttcttcggcttgatgttactt 598
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gtgctaacatatccttctgaggaattacttgacagtgccttcttcggcttgatgttactt 797
Query: 599 ggttaactttacccaaatgattgagtgct 627
|||||||||||||||||||||||||||||
Sbjct: 798 ggttaactttacccaaatgattgagtgct 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1026
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1016
Effective search space: 626872
Effective search space used: 626872
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
