BAC Information

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BAC

Clone NameMSMg01-108E12
Chromosome11 (Build37)
Map Location 71,601,511 - 71,602,029
singlet/doubletsinglet
Overlap geneWscd1
Upstream geneA430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
Downstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108E12.T7 (MSMg01no108_e12.b1)MSMg01-108E12.TJ (MSMg01no108_e12.g1)
ACCAG321771AG321772
length674672
length of high quality
(start - end)
600 (50 - 649)519 (77 - 595)
definitionCHROMAT_FILE: MSMg01no108_e12.b1 PHD_FILE: MSMg01no108_e12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:05 2005CHROMAT_FILE: MSMg01no108_e12.g1 PHD_FILE: MSMg01no108_e12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAAAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCCGTTCTGAGCCCCATTTTTTAATGGGGTTATTTG
ATTTTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGT
CCCCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
TCTTTTTGTCCTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTT
TCATTAGGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCT
GTTCTGTTCAGGAATCTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCT
TGATCCACTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATT
CGCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAA
AATGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCA
AGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCAT
TGGTCTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTATCACAAT
TGCCCTGTAGTAAAGCTTTAGGTC
TCTTCAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGGTTCTTAGCAGGTTAGACTTG
GAAGAGTCCTAGGTCTGCCTGGAAAACTGTAATCTTGGGTGCCAAGTTCA
GATAAATAGTCTGCCACGTGACAAGAGAGAACTCTCTCTCCTATATGCTG
TGAGTTCTTTGCCCTTTGCCCTGGGACTTTCCTGGACAGTGAGGAGTCTG
GGTGAGCCTGTGGGACCCAGGGCCTGATGCCAATGCAGGATAAAAGGATA
AAAATCAGATGCCGACCCAAGCAATCCATCTCAAATCAGGACATATAACA
GATATAACAGGATATATAATCCACCTCAAATCAGGGTGATATAACACATA
TTGAAGTCCATAGACCCCAATATGATTGCAGAGCTGTCTCAGCTCTGTGC
AAGCTCTAGGTGTATATGACTTCATCACACACCTGGCGGTGGATAGAGGA
GATTTTTGGCCTGCCATCTGCATGGCAGTCATTAAAAAAAAAATCACACT
GTGTGGACAGAGCAATCTTGGAGGAGCTGGGGAGGAAGTGTGAGCAGCCA
GGTCTTCCAGAGCCAGGAATGTGTATTCTGATCCTGCTTCACGCTGCCAC
ATGTCAGTCCCCTGCCCAGGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_e12.g1 MSMg01no108_e12.g1 CHROMAT_FILE:
MSMg01no108_e12.g1 PHD_FILE: MSMg01no108_e12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:05 2005
         (519 letters)



>mm_chr11_71601311_71602229
          Length = 919

 Score = 1004 bits (519), Expect = 0.0
 Identities = 519/519 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agggttcttagcaggttagacttggaagagtcctaggtctgcctggaaaactgtaatctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 719 agggttcttagcaggttagacttggaagagtcctaggtctgcctggaaaactgtaatctt 660

                                                                       
Query: 61  gggtgccaagttcagataaatagtctgccacgtgacaagagagaactctctctcctatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 659 gggtgccaagttcagataaatagtctgccacgtgacaagagagaactctctctcctatat 600

                                                                       
Query: 121 gctgtgagttctttgccctttgccctgggactttcctggacagtgaggagtctgggtgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 gctgtgagttctttgccctttgccctgggactttcctggacagtgaggagtctgggtgag 540

                                                                       
Query: 181 cctgtgggacccagggcctgatgccaatgcaggataaaaggataaaaatcagatgccgac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 cctgtgggacccagggcctgatgccaatgcaggataaaaggataaaaatcagatgccgac 480

                                                                       
Query: 241 ccaagcaatccatctcaaatcaggacatataacagatataacaggatatataatccacct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ccaagcaatccatctcaaatcaggacatataacagatataacaggatatataatccacct 420

                                                                       
Query: 301 caaatcagggtgatataacacatattgaagtccatagaccccaatatgattgcagagctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 caaatcagggtgatataacacatattgaagtccatagaccccaatatgattgcagagctg 360

                                                                       
Query: 361 tctcagctctgtgcaagctctaggtgtatatgacttcatcacacacctggcggtggatag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 tctcagctctgtgcaagctctaggtgtatatgacttcatcacacacctggcggtggatag 300

                                                                       
Query: 421 aggagatttttggcctgccatctgcatggcagtcattaaaaaaaaaatcacactgtgtgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 299 aggagatttttggcctgccatctgcatggcagtcattaaaaaaaaaatcacactgtgtgg 240

                                                  
Query: 481 acagagcaatcttggaggagctggggaggaagtgtgagc 519
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 239 acagagcaatcttggaggagctggggaggaagtgtgagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 919
Length adjustment: 10
Effective length of query: 509
Effective length of database: 909
Effective search space:   462681
Effective search space used:   462681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)