Query= MSMg01no108_j18.b1 MSMg01no108_j18.b1 CHROMAT_FILE:
MSMg01no108_j18.b1 PHD_FILE: MSMg01no108_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:31 2005
(578 letters)
>mm_chr11_87427408_87428385
Length = 978
Score = 1096 bits (567), Expect = 0.0
Identities = 573/575 (99%)
Strand = Plus / Minus
Query: 4 ggaattcctatctcacctactatgatctgctctcttcaaggtagaggagagatgggtctc 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 778 ggaattcctatctcatatactatgatctgctctcttcaaggtagaggagagatgggtctc 719
Query: 64 actatcacttggagtttggttataagtaagcctttctattgctgtttgggcactgtgcac 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 actatcacttggagtttggttataagtaagcctttctattgctgtttgggcactgtgcac 659
Query: 124 caggcagtatttatgaatcatcttgggacctccaggagatagaagctggagtcaccaact 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 caggcagtatttatgaatcatcttgggacctccaggagatagaagctggagtcaccaact 599
Query: 184 cagtgtgaagcttccagactctgggtctaggtcaggaccatcaccccaaagtgagggtct 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 cagtgtgaagcttccagactctgggtctaggtcaggaccatcaccccaaagtgagggtct 539
Query: 244 ctccagtagaaaaagctcctgccaaattcaaattcctctgctccggtcacatggtaccaa 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 ctccagtagaaaaagctcctgccaaattcaaattcctctgctccggtcacatggtaccaa 479
Query: 304 ggaggatttctcaagacggtatctttgagctctgtgttcatgagccataccaaggaacct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ggaggatttctcaagacggtatctttgagctctgtgttcatgagccataccaaggaacct 419
Query: 364 tccagactacacctgaagcagatcctcccttcaaatctgctaaaaatggacagatcattt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tccagactacacctgaagcagatcctcccttcaaatctgctaaaaatggacagatcattt 359
Query: 424 cctctggcattcaactggaagccgtagcaatgggtttcttcagatgttggctcatgagtt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cctctggcattcaactggaagccgtagcaatgggtttcttcagatgttggctcatgagtt 299
Query: 484 ccctggcacgagatacttgaatgtgttcataacatgagttacagacgagaactgggtcat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ccctggcacgagatacttgaatgtgttcataacatgagttacagacgagaactgggtcat 239
Query: 544 agagttgctgatcaggaatgggcagcttaaggtgg 578
|||||||||||||||||||||||||||||||||||
Sbjct: 238 agagttgctgatcaggaatgggcagcttaaggtgg 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 978
Length adjustment: 10
Effective length of query: 568
Effective length of database: 968
Effective search space: 549824
Effective search space used: 549824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no108_j18.g1 MSMg01no108_j18.g1 CHROMAT_FILE:
MSMg01no108_j18.g1 PHD_FILE: MSMg01no108_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:32 2005
(348 letters)
>mm_chr11_87274892_87275639
Length = 748
Score = 654 bits (338), Expect = 0.0
Identities = 341/342 (99%), Gaps = 1/342 (0%)
Strand = Plus / Plus
Query: 1 cagtctagccagtgccacagtcaaatcctgtctca-taacaaacaaataggggccagagt 59
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 200 cagtctagccagtgccacagtcaaatcctgtctcaataacaaacaaataggggccagagt 259
Query: 60 tggtagtgtactcttataaacccagcattcagaaagatggggcatgtagatcacttttaa 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tggtagtgtactcttataaacccagcattcagaaagatggggcatgtagatcacttttaa 319
Query: 120 gttcgaggccagcctgggctacatagggaaaccttatctcgaataacaacaaaacgtttt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttcgaggccagcctgggctacatagggaaaccttatctcgaataacaacaaaacgtttt 379
Query: 180 aaagttaaaaatggagcaattcaaaataaatagtatgcagttctggaattgctattttcc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaagttaaaaatggagcaattcaaaataaatagtatgcagttctggaattgctattttcc 439
Query: 240 ccacgtggtttttcgtttgttcctcacaggaggcttcaggcttgagcccaatgtctataa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ccacgtggtttttcgtttgttcctcacaggaggcttcaggcttgagcccaatgtctataa 499
Query: 300 actgtcgcgcgtctgcgaacttgcggcttcgcgaagcttacg 341
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 actgtcgcgcgtctgcgaacttgcggcttcgcgaagcttacg 541
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space: 250521
Effective search space used: 250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
