BAC Information

Click to search

BAC

Clone NameMSMg01-108J24
Chromosome11 (Build37)
Map Location 31,129,961 - 31,130,331
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243, Psme4, Gpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2
Downstream geneStc2, 2310022M17Rik, Cpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-108J24.T7 (MSMg01no108_j24.b1)MSMg01-108J24.TJ (MSMg01no108_j24.g1)
ACCAG322023AG322024
length689720
length of high quality
(start - end)
238 (78 - 315)371 (78 - 448)
definitionCHROMAT_FILE: MSMg01no108_j24.b1 PHD_FILE: MSMg01no108_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:33 2005CHROMAT_FILE: MSMg01no108_j24.g1 PHD_FILE: MSMg01no108_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:11:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXNATCGTTAGCGAGCGCG
GAATTCTTTGGTTTTCCAACATATGGAATTGAGAGTTTGGTCGGGTATAG
TAGCCTGGGCTGGCATTTGTTTTCTCTTAGTGTCTGTATAACATCTGTCC
AGGCTCTTATGGCTTTCATAGTCTCTGGTGAAAAGTCTGGTGTAATTCTG
ATAGGCCTTCCTTTATATGTTACTTGACCTATCTCCCTTACTGCTTTTAA
TATTCTATCTTTATTTAGTGCATTTGTTGTTCTGATTATTATGTGTCGGG
AGGAATTTCTTTTCTGTNCCTGCTTATTTGGAGNTCTGTAGGCTTCTTGT
ATGTTCATGGGCATCTCTTTCTTTATGTTTGGGAAGTTTTCTTCAATTAT
TTTGTTGAAGATATTAGCTGGCCCTTTAAGTTGAAAATCTTTATTCTCAT
CAATTCCTATTATCTGTAGGTTTGGTCTTCTCATTGTGTCCTGGATTTCC
TGGATGTTTTGAGTTAGGATCCTTTTGCATTTTGTATTTTCTTTGACTGT
TGTGTCGATGTTCTCTATGGAATCTTCTGCACCTGAGATTCTCTCTTCCA
TTTCTTGTATTCTGTTGCTGATGCTCGCATCTATGGTTCCAGATCTCTTT
CCTATTTTTTCTATCTCCAGCGTTGCCTCACTTTGGTTT
TTTTACGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGAATAGAAATGAGGAATAGT
TCCTGAAAAAGATGGAAAAGCCACCACTGCAGAGACTCTGGGACTCTTGG
GGAGCATTGCTTAAGTGCTCACGTGCAGCAGTTTCTGTCTTGCTTATTAC
TTGGAGAGAGAAGCTCCTGTAAAAACATTGGGGCAGATGAAAAGAGGAGA
ACTGCTTGCAGGCGATAAGGAAATCAACAGGAGGGGAGGAGGGTGAGTAC
GAATGAGTAAAGCACAATGATAAACATACAAGAACGTGTCCTTGTGAAGC
CCACTAGTGTTTGTATGTGAATGAGAATGGAGACATGATCATTCCAAGGT
ATGTTGAAGAGAAGGTTTTTATTGTAGCTTTGAGAGAGTATAGCTAAAGG
CAAGGGGATTGAGGGAAGAAAAGAGAGAAGAGGAGAGAGTACCAGTAGAC
TAAAGAACGAGTCAAGGGCCAAGAGAATGTATGGCAGGTTTATATAGGAA
AGAGAAACTGAGGGAAGGGAAGTAAAGTCCAACCCTGGGCTGGAGACACC
TCTCCAGGAGACCACGATGGCTGAAAAGTGCTGGGTGGAGTCTAAGATAT
TGAATGAGCCTCGCCCCTGGGTTTGGGGTACTGACACTATGTCAGCAATC
AAATTTCTTACGACAATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no108_j24.g1 MSMg01no108_j24.g1 CHROMAT_FILE:
MSMg01no108_j24.g1 PHD_FILE: MSMg01no108_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:11:33 2005
         (371 letters)



>mm_chr11_31129761_31130531
          Length = 771

 Score =  717 bits (371), Expect = 0.0
 Identities = 371/371 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgaatagaaatgaggaatagttcctgaaaaagatggaaaagccaccactgcagagact 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 cttgaatagaaatgaggaatagttcctgaaaaagatggaaaagccaccactgcagagact 512

                                                                       
Query: 61  ctgggactcttggggagcattgcttaagtgctcacgtgcagcagtttctgtcttgcttat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 ctgggactcttggggagcattgcttaagtgctcacgtgcagcagtttctgtcttgcttat 452

                                                                       
Query: 121 tacttggagagagaagctcctgtaaaaacattggggcagatgaaaagaggagaactgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tacttggagagagaagctcctgtaaaaacattggggcagatgaaaagaggagaactgctt 392

                                                                       
Query: 181 gcaggcgataaggaaatcaacaggaggggaggagggtgagtacgaatgagtaaagcacaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gcaggcgataaggaaatcaacaggaggggaggagggtgagtacgaatgagtaaagcacaa 332

                                                                       
Query: 241 tgataaacatacaagaacgtgtccttgtgaagcccactagtgtttgtatgtgaatgagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 tgataaacatacaagaacgtgtccttgtgaagcccactagtgtttgtatgtgaatgagaa 272

                                                                       
Query: 301 tggagacatgatcattccaaggtatgttgaagagaaggtttttattgtagctttgagaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 tggagacatgatcattccaaggtatgttgaagagaaggtttttattgtagctttgagaga 212

                      
Query: 361 gtatagctaaa 371
           |||||||||||
Sbjct: 211 gtatagctaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)