Query= MSMg01no109_b16.b1 MSMg01no109_b16.b1 CHROMAT_FILE:
MSMg01no109_b16.b1 PHD_FILE: MSMg01no109_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:11 2005
(255 letters)
>mm_chr11_21228595_21229248
Length = 654
Score = 435 bits (225), Expect = e-126
Identities = 243/249 (97%), Gaps = 1/249 (0%)
Strand = Plus / Minus
Query: 7 gaattctttaggtattaccgttccaaggagtcgttttctgcctgtgaaaaccacatcaga 66
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 gaattctttaggtattaatgttccaaggagtcgttttctgcctgtgaaaaccacatcaga 395
Query: 67 tctcttgcttgtgatgtcaaacctctatagccttaacgcaggatctctgaccatgagtga 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tctcttgcttgtgatgtcaaacctctatagccttaacgcaggatctctgaccatgagtga 335
Query: 127 aaagcgtgacattccctacagtgcccttggttaaattaggcagttcttttaccaaggtag 186
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 aaagcgtga-attccctacagtgcccttggttaaattaggcagttcttttaccaaggtag 276
Query: 187 gcaactggaaagatacttggagaattattttccactactgactttgcatggctccatctg 246
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 275 gtaactggaaagatacttggagaattatgttccactactgactttgtatggctccatctg 216
Query: 247 tggtgtggt 255
|||||||||
Sbjct: 215 tggtgtggt 207
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 654
Length adjustment: 9
Effective length of query: 246
Effective length of database: 645
Effective search space: 158670
Effective search space used: 158670
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no109_b16.g1 MSMg01no109_b16.g1 CHROMAT_FILE:
MSMg01no109_b16.g1 PHD_FILE: MSMg01no109_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:12:11 2005
(490 letters)
>mm_chr11_21118691_21119580
Length = 890
Score = 905 bits (468), Expect = 0.0
Identities = 486/492 (98%), Gaps = 3/492 (0%)
Strand = Plus / Plus
Query: 1 caggaccttcagactacacagagaaactatgttttgaaaacaaaaaacaaaaaacaaaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 caggaccttcagactacacagagaaactatgttttgaaaacaaaaaacaaaaaacaaaac 259
Query: 61 aaaagcaaaagaaaagaaagaagagag-attattttgatgcttttacaatatatacaatt 119
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 260 aaaagcaaaagaaaagaaagaagagagtattattttgatgcttttacaatatatacaatt 319
Query: 120 ctgtggctctctaagtaatatgcctcagaagattttaatgctaacaagtttaagaattaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgtggctctctaagtaatatgcctcagaagattttaatgctaacaagtttaagaattaa 379
Query: 180 gcacat-ggggggggggaaaggggggaggctcagaggttaagagcacaggctgttctttc 238
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcacattggggggggggaa-ggggggaggctcagaggttaagagcacaggctgttctttc 438
Query: 239 agagaacccaggttcaattcctaccactcacatagcagctcacaattgtctataactcca 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 agagaacccaggttcaattcctaccactcacatagcagctcacaattgtctataactcca 498
Query: 299 gttccaggggctccaatactgtcacacagacagacatacagacatgcacgcaaaacattg 358
|||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 499 gttccaggggctccaacactgtcacacagacagacatacagacatgtaggcaaaacattg 558
Query: 359 atgcacataaaataaataagcttgttttaaattaagcaaatcttaaaatgtaaataaagt 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atgcacataaaataaataagcttgttttaaattaagcaaatcttaaaatgtaaataaagt 618
Query: 419 ttaaaaatataaactgatgggtgtatttttcatcttaaataatttccttctgtaagtgaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttaaaaatataaactgatgggtgtatttttcatcttaaataatttccttctgtaagtgaa 678
Query: 479 attgtaaggtgg 490
||||||||||||
Sbjct: 679 attgtaaggtgg 690
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 490
Length of database: 890
Length adjustment: 10
Effective length of query: 480
Effective length of database: 880
Effective search space: 422400
Effective search space used: 422400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
