Query= MSMg01no109_o20.b1 MSMg01no109_o20.b1 CHROMAT_FILE:
MSMg01no109_o20.b1 PHD_FILE: MSMg01no109_o20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:19 2005
(627 letters)
>mm_chr11_95974304_95975328
Length = 1025
Score = 1125 bits (582), Expect = 0.0
Identities = 616/636 (96%), Gaps = 16/636 (2%)
Strand = Plus / Minus
Query: 4 ggaattcactctgcacaccagcctggcctcgaactcacagagatccatctgcctctg--- 60
||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 921 ggaattcactctgtagaccagcctggcctcgaactcacagagatccatctgcctctgcct 862
Query: 61 ----------ggg-tcaaaggtgtgtgccaccactgccactaccacccggctcagctatt 109
||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 cctgagtgctgggatcaaaggtgtgtgccaccactgccactaccacccggctcagctatt 802
Query: 110 ttctcaatcttaatagatttgacatccttttgcctaggtttgtgcagaaagaccttaatt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttctcaatcttaatagatttgacatccttttgcctaggtttgtgcagaaagaccttaatt 742
Query: 170 ttctcaaatcttattttcaaaaattaaaatttgttcattgttaatagagtgtgtgcctgt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttctcaaatcttattttcaaaaattaaaatttgttcattgttaatagagtgtgtgcctgt 682
Query: 230 gagttcatgataataggtgaagggcgttggtagcgctgtgcccatgcagatcagcaggct 289
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 681 gagttcatgataataggtgaagg--gttggtagcgctgtgcccatgcagatcagcaggct 624
Query: 290 gctttgccctgttggttttctttctctgcctttccttggactttgggatagaatttgggt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gctttgccctgttggttttctttctctgcctttccttggactttgggatagaatttgggt 564
Query: 350 ccctgggattgtgcaacaagtgattctctgatggaaccattttaccaagctgatattctc 409
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 563 ccctgggattgtgcaacaagtgattctctgatggaaccattttaccaatctgatattctc 504
Query: 410 agacattggaagaggcactcagagagtctgcaggagggtacccaagatgttcctagaagg 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agacattggaagaggcactcagagagtctgcaggagggtacccaagatgttcctagaagg 444
Query: 470 cagaattagaatgtttctttccctgtcttaaatctaaaagtacttcagaagcatgaatgt 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cagaattagaatgtttctttccctgtcttaaatctaaaagtacttcagaagcatgaatgt 384
Query: 530 tctggttatgtgatacagagcatttcttccagattcaaacgctcggaacgcctttgagaa 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tctggttatgtgatacagagcatttcttccagattcaaacgctcggaacgcctttgagaa 324
Query: 590 gggaagggacttttcagaacttaatcttccataggc 625
||||||||||||||| ||||||||||||||||||||
Sbjct: 323 gggaagggacttttcggaacttaatcttccataggc 288
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1025
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1015
Effective search space: 626255
Effective search space used: 626255
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no109_o20.g1 MSMg01no109_o20.g1 CHROMAT_FILE:
MSMg01no109_o20.g1 PHD_FILE: MSMg01no109_o20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:13:19 2005
(426 letters)
>mm_chr11_95895214_95896036
Length = 823
Score = 708 bits (366), Expect = 0.0
Identities = 404/426 (94%), Gaps = 17/426 (3%)
Strand = Plus / Plus
Query: 1 ctctgcagaaattcttgagttgggttaagattttacagctaagggccaggcatggtggct 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ctctgcagaaattcttgagttgggttaagattttacagctaagggccaggtatggtggct 260
Query: 61 caagatggggaagatctctgaattcaaggccagtgtggtctacagagcaagtgaattcta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caagatggggaagatctctgaattcaaggccagtgtggtctacagagcaagtgaattcta 320
Query: 121 ggactgccaaggctacattgagaaactctgtctccccctagtccactccgacccccccca 180
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct: 321 ggactgccaaggctacattgagaaactctgtctccccctagcccactccg-ccccctcca 379
Query: 181 aaaaaaacccaaatttgagtcagactgtctgactcatagctagtcctatttcatgacgtt 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaaa--cccaaatttgagtcagactgtctgactcatagctagtcctatttcatgacgtt 437
Query: 241 aagtaatttaaggcagattcccgaatcccttgtgaaatacaataccaactcacgaacttg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 aagtaatttaaggcagattcccgaatcccttgtgaaatacaataccaactcacgaacttg 497
Query: 301 agggttttgaacaagtatagaacaaggcaagttgtgcagtgcgtggcacaaaactatcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agggttttgaacaagtatagaacaaggcaagttgtgcagtgcgtggcacaaaactatcag 557
Query: 361 atgctgccgcctttttttttttttttttttttttttggcaatctaaggtttagttttatt 420
|||||||||||||||||||||| || |||||||||||| ||||||||
Sbjct: 558 atgctgccgcctttttttttttgtt--------------aatctaaggtttcgttttatt 603
Query: 421 ctcggt 426
||||||
Sbjct: 604 ctcggt 609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 426
Length of database: 823
Length adjustment: 9
Effective length of query: 417
Effective length of database: 814
Effective search space: 339438
Effective search space used: 339438
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
