BAC Information

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BAC

Clone NameMSMg01-111G14
Chromosome11 (Build37)
Map Location 82,056,415 - 82,057,043
singlet/doubletsinglet
Overlap genenone
Upstream geneAccn1, 1700071K01Rik, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1
Downstream geneTmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111G14.T7 (MSMg01no111_g14.b1)MSMg01-111G14.TJ (MSMg01no111_g14.g1)
ACCAG324087AG324088
length1,1301,213
length of high quality
(start - end)
---636 (86 - 721)
definitionCHROMAT_FILE: MSMg01no111_g14.b1 PHD_FILE: MSMg01no111_g14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:42 2005CHROMAT_FILE: MSMg01no111_g14.g1 PHD_FILE: MSMg01no111_g14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:15:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCCTGGAGCTCNTCCGNGAAAGNCNCCCANGAANGNGNANTCCTCCAG
GTCCCCCAGGNANCCCCNCAGAGGNAGNNCNCCCNCCCGGNNNCCCACCN
NGCCCCNNCCAAANGCACCCANGCNCCGCCCNGCCCAGNCNCACCAGACA
NGNGAGAACCCCCAAGCCAGGCNGGGGGAGGAGCCCCCCCAACGACCCAG
CACACCCAAAACAAACACCAACCCACAAAAACCCACCACACACCCCACCC
CAAACCAAATTTACAAGAAACCCACACCCCCCACCCACCAACAACCCCAA
ACACCACCCCCCAACCCAAACAAATTTTTTTTTTCCCCCCCCACACCCCC
CAACCAACCAAAAAAAAACCCCCCCCCAAAAAGACCCCCCCCCCACGAAC
ACCCACCCCAAAAAAAAAAAAAACCCCCAACCCCCCCAAAACACACACCC
CACCCAACACACACCCCACCACACCAACAACACCCCCCCACACACCCAAC
ACACCCACCAAACCCCACACCCCCACCCCCCCACACCACACCCCAACACA
CACAACACCCCAACACCAACACCCCCCCAAACGCCCAACCACCACCAAAC
CCACACCCCCAACCCCCACAAACCACCACCCACCACACCACCCCAACAAC
CCCCACCCACACACCACCCCCAAACAAAAACCCACCCACAACACACCCTT
TTTTTTTTTTTTTTCCCACTCCCCTACCTCACTCTCTCTCACCATCCTAT
TCCTCTCTTTCCCCCCACCCCCATCCTTATTCCTTTTTTTTTTTCTTATC
CACCCCTCATACTACCAACTATCACATCTTTTTTTAATTCTTCTTTCTCT
CACACATATCTCATCTTCTTCCTCACCATCTAACCTTCTATATTTCTCCT
TCCTTTTTACCTTTTCCTATATACCATACATCTCTACCTTTTCCACTTTC
TCTACTCCCTTTCTTCTCGCTTTCTCCAACTTTCTCTCTAACCATTCTCT
ATCCCCCCATTTTCTCTACTACTTTCCCATATCTCTCACCTCCGTTCTTC
TTTTTTCATTTTACTTCTGTCTCTCTTTTCTCCATTTAGCTCCTTTTCTA
CCCTTCCTTGACTTATGTTTTCTTTACTAC
GGGCTTGTNTTTTACGTATGGAGNCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAGGATCACGCCGCAGCCACC
CTTCTATGTGTGGGCCATCGGAAGGGAGACAAGCCCAAGGTTTCGGAAGA
GAAGCTCAAGTTCACTCCACAGCAACATTCTCTAGACAAGAGGGATGCAG
GCTCCTTGCTTTACCGGATAGAACCTGGGTCAAAGCAAGGGCAGTCTTAG
TTGCTTTTCGAGCTGCTATGATAAAATGCCCTGACAAAGCCAACATAAGG
AAGGAAGGGTTCCCTTCAGCTCACAGTTGGAGGCTACAGTCTACCATGAC
AGGTAGCCACAGTGGCTGGAGCTTGAGGCAGCTGGCCACATTGCATCTGC
AGTCTAGAAAAGAGGAATAATAAATGCTTATCCACAGCTCATGCTCTCTT
CCTATACAGCCCCAGATCCCAGGCCAGGGAATGGTGCCACCCACAGTGGG
CTTGTCTTTCCACCTTCATTAGCTTGCTCAACAGGATCCCCCATAAGCAT
GCCTACAAAACATGTCTCCCAGGTGACTACAGATCCTATTGAGTGCAGAA
TTTAGATTAGCCATCACAGCAAGAATAGGTCATTTTGTTCCGTCTTCTAT
TCTGCAGCAGCAGGAGCACAGCCAAACATTTGTTGGGACATAGGACACTG
CTCTCTGCTCCCAGGCTGCGGCCTTAGGTCCACTCACCATACAAGTTACC
AAGCTTCACCCTCGTGACCACTATCCTTGTGAATTCCCAACACTCGTTTC
TCCTACTGCATTATCTATAGTATAGCTTTAGGGTCTGGCACCCTTACTCC
CGAATGTGGAGCCATCATGAAATGTATCAGTGTCCCTATATGAAGAAGCC
CCGAGAATCCTGGGAAGAGTAAATCCTAGTCTGTTAAGTGTTTGCTGTGG
TGCTGTGATAATCCCATGTTAAAATGCTCCAAAATCTGCGAAAAAATGCC
TGGTGGCTTTTGAGACCCCTAAGTCTTAAGTAAACCTTTGGGTTCACTTA
ATCTAGTCTAGCCCATTTCTTAAAATAAAAATTCCTCGAATTCCCCTTTA
AAAGCTCCGGTCTGGAATACCCTCAGGGGCAAAAAAACCTGTGGCATGGT
GTCCTCTACGATAACTCCCAATGTATTGGCTTTATATAAGTCTAACCGTG
TCCCTTGGTTCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_g14.g1 MSMg01no111_g14.g1 CHROMAT_FILE:
MSMg01no111_g14.g1 PHD_FILE: MSMg01no111_g14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:15:42 2005
         (636 letters)



>mm_chr11_82056211_82057246
          Length = 1036

 Score = 1137 bits (588), Expect = 0.0
 Identities = 620/632 (98%), Gaps = 3/632 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   ccgcagccacccttctatgtgtgggccatcggaagggagacaagcccaaggtttcggaag 64
           |||||||||||||||||||||||||  |||||||||||||||||   |||||||||||||
Sbjct: 205 ccgcagccacccttctatgtgtgggatatcggaagggagacaaggagaaggtttcggaag 264

                                                                       
Query: 65  agaagctcaagttcactccacagcaacattctctagacaagagggatgcaggctccttgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 265 agaagctcaagttcactccacagcaacattctctagacaagagggatgcaggctccttga 324

                                                                       
Query: 125 tttaccggatagaacctgggtcaaagcaagggcagtcttagttgcttttcgagctgctat 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttacccgatagaacctgggtcaaagcaagggcagtcttagttgcttttcgagctgctat 384

                                                                       
Query: 185 gataaaatgccctgacaaagccaacataaggaaggaagggttcccttcagctcacagttg 244
           |||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gat---atgccctgacaaagccaacataaggaaggaagggttcccttcagctcacagttg 441

                                                                       
Query: 245 gaggctacagtctaccatgacaggtagccacagtggctggagcttgaggcagctggccac 304
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 442 gaggctacagtctaccatgacaggaagccacagtggctggagcttgaggcagctggccac 501

                                                                       
Query: 305 attgcatctgcagtctagaaaagaggaataataaatgcttatccacagctcatgctctct 364
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 attgcatctgcagtcaagaaaagaggaataataaatgcttatccacagctcatgctctct 561

                                                                       
Query: 365 tcctatacagccccagatcccaggccagggaatggtgccacccacagtgggcttgtcttt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tcctatacagccccagatcccaggccagggaatggtgccacccacagtgggcttgtcttt 621

                                                                       
Query: 425 ccaccttcattagcttgctcaacaggatcccccataagcatgcctacaaaacatgtctcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ccaccttcattagcttgctcaacaggatcccccataagcatgcctacaaaacatgtctcc 681

                                                                       
Query: 485 caggtgactacagatcctattgagtgcagaatttagattagccatcacagcaagaatagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 caggtgactacagatcctattgagtgcagaatttagattagccatcacagcaagaatagg 741

                                                                       
Query: 545 tcattttgttccgtcttctattctgcagcagcaggagcacagccaaacatttgttgggac 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 tcattttgttccgtcttctattctgcagcagcaggagcacagccaaacatttgttgggac 801

                                           
Query: 605 ataggacactgctctctgctcccaggctgcgg 636
           ||||||||||||||||||||||||||||||||
Sbjct: 802 ataggacactgctctctgctcccaggctgcgg 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)