BAC Information

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BAC

Clone NameMSMg01-111I19
Chromosome11 (Build37)
Map Location 88,337,680 - 88,501,337
singlet/doubletdoublet
Overlap geneMsi2
Upstream geneTex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-111I19.T7 (MSMg01no111_i19.b1)MSMg01-111I19.TJ (MSMg01no111_i19.g1)
ACCAG324192AG324193
length1,1771,180
length of high quality
(start - end)		547 (116 - 662)592 (125 - 716)
definitionCHROMAT_FILE: MSMg01no111_i19.b1 PHD_FILE: MSMg01no111_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:01 2005CHROMAT_FILE: MSMg01no111_i19.g1 PHD_FILE: MSMg01no111_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:16:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,500,868 - 88,501,337)(88,337,680 - 88,338,271)
sequence
TTTGGTCAGTGGGCCTATXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTTTGATAAAAGACCTTTTAAATTTTTCCTGAGGTGTATGTGTTTGGGG
CTTTGCCTTATGAGTGCAGTGTTCTCAGAGGCCAGGAGAGGGCGTTGGGT
CGCTGGGGGCTGGAGTTGTAGGTGGTTGTGAGCCACTGGATGTTGGTACT
GGGAACTGAACTCTGTCCTCAATAAGCCGCAGATGCTCTTTACTGCCAAG
CCACCTCTCCAAGTCTTTGTTCATTTGTTTTTCTGAGACAGGGTTTCTCT
GTGTGGCCCTGGCTATCGTGGAACTCACTCTGTACACCAGGCTGGCCTGT
GTTTCTGTGTGAACTCATAAAGATCAGCCTGCCTCTGCCACCTTTGACCC
TGTAGCCTTTCCAAACTTGTAGCCATCCTTCTGCCTGTGGCTCTAGAGTA
CTAAGCCACAGGGTTGCAGCAGCATGTCTGGCTTCAAGACCAGGTCATGT
CTCGTTCTTGTTTGAATCATGAATTGGACATTTTTTACAAAGTGTCCTGT
GTATAAAAGGAATTCAAGCCATGTCAGCCTATCAGTATTTGAATTATGGG
ACCTATATTCCACGATACCTTTTTAAAAATGACCTTAACCATTGTTTTGA
TACAATGAATGCAGGGCTGGGAGCTTAGCTGGTAGTGTGCTTGCCTAGCG
TGCACAGTTCTGTGGGTTTAATCATCAGGTCAACAGAAACCAGCTGGTAT
ATGCCTGCAATCCCCAGAGGCAGGGGGATCAGAAGTTCAAGGTCCCCCCC
AGCTACTTAATGAATTTGATACTAATCTGGGCTACCAGGAAGTTCTGTCT
TAAAAGGGGTGAGAATCTTAAAGTGTGCCCAGTGCTTCCTCTGCCTGTAG
GAATTCTAAGTGAAGGGAAAGAACAGGTCTTAGGCCCGTCCTGCCTGGGT
CCAACTGCTCTCTGACCTGTCTCTGGTACGGTAGGGAGCCGCTTTTGGCT
GTCTTTGTGTCATAACCTTTGAACTTTTCCCACTTGGGGGTGTTGCCCCT
TTCGGGGGCCTCTCCTATTTTGAAGTTTCATTCTGTTCTCTGCCTGTGAT
TGTATATCTGGGGTATTGCTCCTGTTACATTTTTTTTTTTTTCTCCATAC
CCTCGTTTGCTTTGTTATATCCATTAG

CCCCTTCTCCCATTGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTTAAAACCCCGTGACCTAAGAGTTGGC
CTTGAATATAACCTAGACATCCGCAGTAATCTGTCTATCTCCCTTTGGTT
TGGAGACAGATAGAGCTCTGAAAGTACAGGCATCAGAGGCCTGTGGCCTT
TTCTTTTCTGACTGGGGGAGGGAGGAGGGAGAGTAACATTTGGCAAAGCA
TCTGAAAGGCTTCAAGTCCTGTAATTTGAAACAAACCAGAAGAATTAAGG
AACAAATAAAAGCCCCTCCCCCCTTTTTTTAAACCAGACATCGAACTTGT
CCTTGTGTCCTGGAGAAAACAAATATCTTGGAGATTTGTGCACAAGTCAA
CTGGGCACAGAGGTTTCTAGAATCTGGGCCATACTAGGCATGATCCCTTC
AATGTGGTACCTCTCACAAGTCATTGATCTCCTTTGCCAACCATCCCAGA
GCCAAGAAAGGGTACTCTCATGGACTGTGTGCTCAGGACCTCATCCAGCA
GGGCCACTCTGCTTCCATGTGCCTAGCTCAGCTCAGCCTTTGCTGCAAGG
CTATAAACCCAGGGATTAGCAAATGTCTCCAAAACTTCCCTAGGTGGGCA
GGTCCTCACAGGACCAGGCAGGCAGGAGCTCTTGGGCCCTGCTCTCTAAA
TCTGCTCTAAGCTGCCAAAGACAGCATCCTTGCAGAGAGAGAAGACAGAA
CAGCTGTGTGCCCCCTCTACAGTCCCGGCAGCTTCCACGAAAGGCTGGGG
AGGCCACTGGACCGGGGCCTTGACAGCCTCTTGAGTCCGGCATCCCCCTA
TTCCTTACAATAGTCCCACATTCCTCACCTTCCTGCCAGGAATCTCCCAG
GAGAAAAAGGCCCACTGAAGTCCCCCATCTTATGAATAGAGAACTCCCTC
TGAGAACCCCTGGGGTCTCTGGGAAGCTATGCCTGCTGCCCAACTTATCA
CCTTCCAACCTAAAAAAAAGGGCCCCCGAAGGGGGGTCCTCCCCCGGGAA
TCCTACCCCCTTGGGTGGGTATGGGGATTTTGCCAAAAAGGCCGGAAATC
CCCTTTCCAAGCCCCCCTCGGAAAAACTTTTCTGGGAAAATAGTCCAAGG
CTTTCTGCTCAAATCCCGGAATATAATGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no111_i19.b1 MSMg01no111_i19.b1 CHROMAT_FILE:
MSMg01no111_i19.b1 PHD_FILE: MSMg01no111_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:01 2005
         (547 letters)



>mm_chr11_88500391_88501337
          Length = 947

 Score =  909 bits (470), Expect = 0.0
 Identities = 470/470 (100%)
 Strand = Plus / Minus

                                                                       
Query: 78  ttggtactgggaactgaactctgtcctcaataagccgcagatgctctttactgccaagcc 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 947 ttggtactgggaactgaactctgtcctcaataagccgcagatgctctttactgccaagcc 888

                                                                       
Query: 138 acctctccaagtctttgttcatttgtttttctgagacagggtttctctgtgtggccctgg 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 887 acctctccaagtctttgttcatttgtttttctgagacagggtttctctgtgtggccctgg 828

                                                                       
Query: 198 ctatcgtggaactcactctgtacaccaggctggcctgtgtttctgtgtgaactcataaag 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 ctatcgtggaactcactctgtacaccaggctggcctgtgtttctgtgtgaactcataaag 768

                                                                       
Query: 258 atcagcctgcctctgccacctttgaccctgtagcctttccaaacttgtagccatccttct 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 767 atcagcctgcctctgccacctttgaccctgtagcctttccaaacttgtagccatccttct 708

                                                                       
Query: 318 gcctgtggctctagagtactaagccacagggttgcagcagcatgtctggcttcaagacca 377
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 gcctgtggctctagagtactaagccacagggttgcagcagcatgtctggcttcaagacca 648

                                                                       
Query: 378 ggtcatgtctcgttcttgtttgaatcatgaattggacattttttacaaagtgtcctgtgt 437
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 647 ggtcatgtctcgttcttgtttgaatcatgaattggacattttttacaaagtgtcctgtgt 588

                                                                       
Query: 438 ataaaaggaattcaagccatgtcagcctatcagtatttgaattatgggacctatattcca 497
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 587 ataaaaggaattcaagccatgtcagcctatcagtatttgaattatgggacctatattcca 528

                                                             
Query: 498 cgatacctttttaaaaatgaccttaaccattgttttgatacaatgaatgc 547
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cgatacctttttaaaaatgaccttaaccattgttttgatacaatgaatgc 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 547
Length of database: 947
Length adjustment: 10
Effective length of query: 537
Effective length of database: 937
Effective search space:   503169
Effective search space used:   503169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no111_i19.g1 MSMg01no111_i19.g1 CHROMAT_FILE:
MSMg01no111_i19.g1 PHD_FILE: MSMg01no111_i19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:16:02 2005
         (592 letters)



>mm_chr11_88337480_88338471
          Length = 992

 Score = 1137 bits (588), Expect = 0.0
 Identities = 591/592 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtaatctgtctatctccctttggtttggagacagatagagctctgaaagtacaggcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaatctgtctatctccctttggtttggagacagatagagctctgaaagtacaggcatc 260

                                                                       
Query: 61  agaggcctgtggccttttcttttctgactgggggagggaggagggagagtaacatttggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaggcctgtggccttttcttttctgactgggggagggaggagggagagtaacatttggc 320

                                                                       
Query: 121 aaagcatctgaaaggcttcaagtcctgtaatttgaaacaaaccagaagaattaaggaaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaagcatctgaaaggcttcaagtcctgtaatttgaaacaaaccagaagaattaaggaaca 380

                                                                       
Query: 181 aataaaagcccctcccccctttttttaaaccagacatcgaacttgtccttgtgtcctgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aataaaagcccctcccccctttttttaaaccagacatcgaacttgtccttgtgtcctgga 440

                                                                       
Query: 241 gaaaacaaatatcttggagatttgtgcacaagtcaactgggcacagaggtttctagaatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaaaacaaatatcttggagatttgtgcacaagtcaactgggcacagaggtttctagaatc 500

                                                                       
Query: 301 tgggccatactaggcatgatcccttcaatgtggtacctctcacaagtcattgatctcctt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggccatactaggcatgatcccttcaatgtggtacctctcacaagtcattgatctcctt 560

                                                                       
Query: 361 tgccaaccatcccagagccaagaaagggtactctcatggactgtgtgctcaggacctcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgccaaccatcccagagccaagaaagggtactctcatggactgtgtgctcaggacctcat 620

                                                                       
Query: 421 ccagcagggccactctgcttccatgtgcctagctcagctcagcctttgctgcaaggctat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagcagggccactctgcttccatgtgcctagctcagctcagcctttgctgcaaggctat 680

                                                                       
Query: 481 aaacccagggattagcaaatgtctccaaaacttccctaggtgggcaggtcctcacaggac 540
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaagccagggattagcaaatgtctccaaaacttccctaggtgggcaggtcctcacaggac 740

                                                               
Query: 541 caggcaggcaggagctcttgggccctgctctctaaatctgctctaagctgcc 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caggcaggcaggagctcttgggccctgctctctaaatctgctctaagctgcc 792


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space:   571524
Effective search space used:   571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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