Query= MSMg01no112_f09.b1 MSMg01no112_f09.b1 CHROMAT_FILE:
MSMg01no112_f09.b1 PHD_FILE: MSMg01no112_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:28 2005
(246 letters)
>mm_chr11_8364327_8364972
Length = 646
Score = 431 bits (223), Expect = e-125
Identities = 238/243 (97%)
Strand = Plus / Plus
Query: 1 acatgggcataaagagacaacagtaagccgtgtacctcagaagcagcactaagaaatgcc 60
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct: 201 acatgggcataaagagacaacagtaagtcgtgcacctcagaagcagcactaagaaatgcc 260
Query: 61 tacggagacatacactcaacacagtatctgaaacctaagaagaaacagctcactctgcag 120
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 tacggagacatacactcaacacagtatctgaaacctaagaagatacagctcactctgcag 320
Query: 121 cctttcggaaattaggtctaggtaagaaagaagagacaaagagagaaaagggagggaggt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctttcggaaattaggtctaggtaagaaagaagagacaaagagagaaaagggagggaggc 380
Query: 181 taaaaacacatgtttgtattttccacaacagactgaagaactaattaagaaagcccttgg 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaaacacatgtttgtattttccacaacagactgaagaactaattaagaaagcccttgg 440
Query: 241 ttc 243
|||
Sbjct: 441 ttc 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space: 150969
Effective search space used: 150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no112_f09.g1 MSMg01no112_f09.g1 CHROMAT_FILE:
MSMg01no112_f09.g1 PHD_FILE: MSMg01no112_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:17:28 2005
(295 letters)
>mm_chr11_8489349_8490043
Length = 695
Score = 420 bits (217), Expect = e-122
Identities = 264/295 (89%), Gaps = 26/295 (8%)
Strand = Plus / Minus
Query: 1 ttctccagccacttctagagtaagagtttggaagagaaacaaccccacctacacagggac 60
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 ttcttcagccacttctagagtaagagtttggaagagaaacaaccccacctacacagg--- 550
Query: 61 gacagacagacagacagacagacagacagacagacacacacacacacacacacacacaca 120
|||| |||||||||||||||||||||||||||| |||||
Sbjct: 549 gaca-acagacagacagacagacagacagacag----------------------acaca 513
Query: 121 cacacacacacacacacctcttttagaagcagggctgaactgactgcacacaccagtcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cacacacacacacacacctcttttagaagcagggctgaactgactgcacacaccagtcct 453
Query: 181 ctccgcattttaacttgcgaaaccaagcttctgctgacaaggctctgccacttttgtaaa 240
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct: 452 ctccgcattttaacttgcgaaaccaagcttctgttgacaaggctctgccacttctgtaaa 393
Query: 241 gctgttatttttaggcaaggattcaggaagtggccacccccacggtcccctgaac 295
||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gctgttaattttgggcaaggattcaggaagtggccacccccacggtcccctgaac 338
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 295
Length of database: 695
Length adjustment: 9
Effective length of query: 286
Effective length of database: 686
Effective search space: 196196
Effective search space used: 196196
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
