BAC Information

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BAC

Clone NameMSMg01-112M04
Chromosome11 (Build37)
Map Location 107,951,370 - 107,951,489
singlet/doubletsinglet
Overlap genePrkca
Upstream geneBptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5
Downstream geneApoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112M04.T7 (MSMg01no112_m04.b1)MSMg01-112M04.TJ (MSMg01no112_m04.g1)
ACCAG325086AG325087
length760721
length of high quality
(start - end)
121 (99 - 219)222 (55 - 276)
definitionCHROMAT_FILE: MSMg01no112_m04.b1 PHD_FILE: MSMg01no112_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:01 2005CHROMAT_FILE: MSMg01no112_m04.g1 PHD_FILE: MSMg01no112_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGGAATTCCCAGC
TCTTTCTTTTCAGTTACAGTTCTTAAAATGATTAATGATAGAATTCACTG
TGTGTGGTCCCCCAAATAAAATAATGACATGTAGCTCAAAATTTGAAGGA
ACATCTGTACAACTCAAGAAGCGCGTCTTTAAAGGTCCAGATAGAAATGG
TGTTTTTGAAGCACCTGGAGACACTGGGAACTTTGACATATCTCCTTTTT
ATTCTAGCTCTTCCTATAATTACAGTTGTCTAAGCCTGTTGATGAGCTTT
CAAAATGTCCCTTTATCCTCCTTGCCACCATGTCTAGGCCATGTGAAAAG
TATGTACCTCTGCTTCAGCCACGGTTGGTGAACGTGTCTTACTCTCATGC
TGAGTGCATTTCACTTTCCTCGTCTATACAAGCAGCTCATTTACCATACA
GCATAGGGCTGCCTACCCCCTCCTAGGTTCAATTATTTGAACTACCAATC
TCTCTATAACCCTTATCTATCTGTCTGCCTGTCTCCATCTCTTCCTTTCC
CTTTCCCCCCTCCTTCGCTTGTTTTCTCCCGTGCCCGATCTCTTTGTTTT
GACCTAATTCCCTCACTCTGCCCCTTTCTGCTCTGATTTTTTCTGCCCCG
CCCTGCCCGGCCCTTACTTGTCTTGTCCTGCTCTGCCCCTGCCTTGTCCT
CGATCTCGCCCCGCCCTGTACCCGACCTTGCCATTTCTTCTTCTCCTATC
AATTCATTCN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXCTGTAATCCCAGAACTCCAGATGGAGGGTGGGGGTGGGGACCAGGG
GTGGGGGAATTCCTTAGGCAAGATGGTGAGCTAAAGGAGCCAAATCAGTA
AGCTCTAGGTTCAACGAGAGGTCTGGCCTCTAAAACTAAAGTGGAGAGTG
ATTGGAGATGTTATCTAAGATCAACCTTTGACCTCTGTATGCACGAGCCC
TGATGTGTGCTGTTCTAGTGTACCAGTCAGCCATCTAGAGCACTATCTCA
TATGTGTACTGTGCTTGCAAACAGATATGACCTCACACACTCGGGCACAT
CGCGCACTCAAACACTGTTTTGCAAAGAAGGAAACTGCACTAGAAGCCAC
TTTCTTATTCCGAGTAAGCTTCTTTGAGCTCTTTCATATTATCCTGCTAT
CTCTGGACCTTTCCCCTATTTATAAAATTCTCATGGACCACGTTCTCTTT
TTTATGGTTTCATGTCTCTCACCTGTCTCCCCTTTCCTGTTAGACGATGT
CACCCGCCCTCCTTTCATTGATTCACTCTTTTTGATTGGCCCTTTTACTT
CCCCTGAAGTTTTTGCTTCCTCTCTTCCATCCTCTCCCCTACTTTTTACC
CCCTCTGTATCTTTTTATCTTTTGCTCCCCGCTTTTCGCCCTTTCCCGTT
TCCGCTTCCCTTTTCCCATCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_m04.b1 MSMg01no112_m04.b1 CHROMAT_FILE:
MSMg01no112_m04.b1 PHD_FILE: MSMg01no112_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:01 2005
         (121 letters)



>mm_chr11_107951170_107951689
          Length = 520

 Score =  211 bits (109), Expect = 1e-59
 Identities = 118/121 (97%), Gaps = 1/121 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtgtggtcccccaaataaaataatgacatgtagctcaaaatttgaaggaacatctgt 60
           ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 320 tgtgtgtgg-cccccaaataaaataatgacatgtagctcaaaatttgaaggagcatctgt 262

                                                                       
Query: 61  acaactcaagaagcgcgtctttaaaggtccagatagaaatggtgtttttgaagcacctgg 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acaactcaagaagcgtgtctttaaaggtccagatagaaatggtgtttttgaagcacctgg 202

            
Query: 121 a 121
           |
Sbjct: 201 a 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 121
Length of database: 520
Length adjustment: 8
Effective length of query: 113
Effective length of database: 512
Effective search space:    57856
Effective search space used:    57856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)