BAC Information

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BAC

Clone NameMSMg01-112P15
Chromosome11 (Build37)
Map Location 121,246,983 - 121,247,386
singlet/doubletsinglet
Overlap geneRab40b
Upstream geneNploc4, Tspan10, Pde6g, 1810049H13Rik, 3110023B02Rik, 2600005N12Rik, Hgs, Mrpl12, Slc25a10, LOC667716, Gcgr, BC003940, Dysfip1, P4hb, Arhgdia, LOC100042371, Thoc4, Anapc11, Npb, Pcyt2, Sirt7, Mafg, Pycr1, 1110012N22Rik, 5730593N15Rik, Aspscr1, Stra13, Lrrc45, Rac3, Dcxr, Cbr2, Hmga1-rs1, LOC667778, Rfng, Gps1, Dus1l, Fasn, Ccdc57, LOC100043454, Slc16a3, Csnk1d, Cd7, Sectm1b, Sectm1a, LOC637008, 4921530G04Rik, Tex19, Uts2r, 1110031I02Rik, Hexdc, BC017643, Narf, Foxk2, Wdr45l
Downstream geneBC032265, Fn3k, Tbcd, Zfp750, B3gntl1, Metrnl, Ptchd3, LOC667879, LOC674842
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-112P15.T7 (MSMg01no112_p15.b1)MSMg01-112P15.TJ (MSMg01no112_p15.g1)
ACCAG325243AG325244
length743740
length of high quality
(start - end)
630 (46 - 675)593 (76 - 668)
definitionCHROMAT_FILE: MSMg01no112_p15.b1 PHD_FILE: MSMg01no112_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:17 2005CHROMAT_FILE: MSMg01no112_p15.g1 PHD_FILE: MSMg01no112_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGAGCCAGTCACTGGTGGCAGCACACCTTTAATCCCAGCACTCGG
GAGGCAGAGGCAGGCGGATCTCTGAGTTCAAGGCCAGTCTGGTCTACAGA
GTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAGAAAA
AAAAAAAAAAAATGAGTTCAGTGTTGGCTAACTCTTAACTATAGCTACTC
CTGAGTTTAAAACCTTCTGAGTTGCTTGTGCTGAGACTATGTTGTCTGTC
TTTGGCTGCACACAGTGTTCTTAGACTGTACTGCTCTTTCCCCTCAATAC
CTGGTAACTTGTTCACAGTCTTTCTGGTATCTGATGTTGTTATGGTGAAA
GCATCATGCCAACTGATTTTCTAAATGGGAGATTTGCCTTTCTTTAGGAA
TTTTTGAAGACCGTTTTTCTTTGCCTTACCTTGCTTAATCAGGCCATGAC
TCAAAATTTTTGATATGTGTGTATTTTGAATTCTAGATAAAAAAATTCCT
TTCTTAATTTCAGAGGAATTTGATTTGTGTCCGTAAAATATCTCCCATTG
CTTTTGTGTTGATTTCTCATTTGCTGTTATGAAAAATGACTACAAGCTGG
CTTANAGCAGCAAGAGTTTATCCTCTACGCAGTTTGGTATCAGTAGAACA
TTTCTACATGTAGCACAGGGAAAATGTCTTCTTATCTTTTTCA
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATGTGTGTAGATGTGCATGTGTA
TGTGTGGGTGTGCATGTTATGAGTACATGTAGAAGCCTGCAGTTGACATC
CAAGTCTTTATCACTCTCTACTTTATTTAACTGAAGCAGCATCTTTGGTT
GAATCCAGAACACAGCATTTTGGCTACCCTGGCAAGCCAGCTTCCTCTGG
TATCCCCCGTCTGTGCCTTCTGAGCACTGGAAATAGCGCTAGGCCACTAG
GCCTGCCCAGCATTTACCTGGGATCTGGGAATCTGAACTCTAGCTCTCTT
GCTTATGCAACAGGTATTTCAACCACTGAATGATCTCCCCAGCTCCTCAT
AGTTTGATTTTAACCTTGGAATGCATAAGCAAGTGGGAAGCCTCTCATAG
AAATCAAGATTAAGGGGGCTGGAGAGATGACTCAGCGGTTAAGAGCACTG
ACTGCTCTTGCAGAGGTCCTGAGTTCAATTCCCAGCAACCGCATGGTGGC
TCACAACCATCCGTAATGAGATTTGATGCCTTCTTCTGGTGTGTCTGAAG
ACAGCTACAGTGTACTCATAAAAATAAATAAATCTTTTTTACAAAAGAGA
AATCGAGATTAAAACAACTATGCAGTGTCCGTTTTAGCTGCTGAATCAAT
GAAGCTGCGGATATAGCTCAGTGGCAGAGTGCTTACCTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no112_p15.b1 MSMg01no112_p15.b1 CHROMAT_FILE:
MSMg01no112_p15.b1 PHD_FILE: MSMg01no112_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:17 2005
         (630 letters)



>mm_chr11_121246356_121247386
          Length = 1031

 Score =  745 bits (385), Expect = 0.0
 Identities = 399/404 (98%), Gaps = 1/404 (0%)
 Strand = Plus / Minus

                                                                        
Query: 228  tgcttgtgctgagactatgttgtctgtctttggctgcacacagtgttcttagactgtact 287
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1031 tgcttgtgctgagactatgttgtctgtctttggctgcacacagtgttcttagactgtcct 972

                                                                        
Query: 288  gctctttcccctcaatacctggtaacttgttcacagtctttctggtatctgatgttgtta 347
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  gctctttcccctcaatacctggtaacttgttcacagtctttctggtatctgatgttgtta 912

                                                                        
Query: 348  tggtgaaagcatcatgccaactgattttctaaatgggagatttgcctttctttaggaatt 407
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  tggtgaaaacatcatgccaactgattttctaaatgggagatttgcctttctttaggaatt 852

                                                                        
Query: 408  tttgaagaccgtttttctttgccttaccttgcttaatcaggccatgactcaaaatttttg 467
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  tttgaagaccgtttttctttgccttaccttgcttaatcaggccatgactcaaaatttttg 792

                                                                        
Query: 468  atatgtgtgtattttgaattctagat-aaaaaaattcctttcttaatttcagaggaattt 526
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 791  atatgtgtgtattttgaattctagataaaaaaaattcctttcttaatttcagaggaattt 732

                                                                        
Query: 527  gatttgtgtccgtaaaatatctcccattgcttttgtgttgatttctcatttgctgttatg 586
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 731  gatttgtgtccgtaaaatatctcccattgcttttgtgttgatttctcatttgctgttacg 672

                                                        
Query: 587  aaaaatgactacaagctggcttanagcagcaagagtttatcctc 630
            ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 671  aaaaatgactacaagctggcttaaagcagcaagagtttatcctc 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1031
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1021
Effective search space:   633020
Effective search space used:   633020
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)