BAC Information

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BAC

Clone NameMSMg01-113H16
Chromosome11 (Build37)
Map Location 76,707,729 - 76,802,390
singlet/doubletdoublet
Overlap geneTmigd1, Blmh
Upstream geneRph3al, 1700016K19Rik, 1500005K14Rik, Vps53, LOC668634, 2310047D13Rik, Gemin4, Dbil5, Glod4, Rnmtl1, Nxn, Timm22, Abr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd
Downstream geneSlc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-113H16.T7 (MSMg01no113_h16.b1)MSMg01-113H16.TJ (MSMg01no113_h16.g1)
ACCAG325605AG325606
length724724
length of high quality
(start - end)
246 (63 - 308)299 (66 - 364)
definitionCHROMAT_FILE: MSMg01no113_h16.b1 PHD_FILE: MSMg01no113_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:55 2005CHROMAT_FILE: MSMg01no113_h16.g1 PHD_FILE: MSMg01no113_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:18:55 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,802,145 - 76,802,390)(76,707,729 - 76,708,027)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGAATCCGCGGAATT
CACAGAGATCCTCCTGCCTCTACCTCCCAGGTGCTGAGACAGAAGTCACA
AGCCACCACCATACTGGGTCATGTACTTTATCTTAATTTGGTATCTGATT
TGCATTGTATATGTAGGACTGCTGTATGATGTCCTGTGTATGTACAGGCA
AACAGACATGCACACACCATTCCGACTTCCCATTGGTCCTCTCCTTCCAC
CTTGAGTCCTGGTGACCGAACTCAGGCATTAGACTCGCCCTCCAGGCACC
TTTCTCAGCTGTGCCGTCTCACCGGCCTTCTCCTATCCTCTGTGGACGGT
TTTGTGTTTTCTTACTGTCTGGGAACTCTCCTACGTTCACTTCCTACCAG
TCCAGAACATTCCACCATAGGTGTTAGTCCATCCATCACTGTCTAACAGA
ATTACATCTCCACCCTAATGGTCAGACTTAACACCTCAATTCCAATGTCC
CTCCCCCCAATCTAGCTACTTTTAGGCCTCTCTGTTTGTTTTTCGCCCCG
TGTGAGAGAAAATTTATTTTTTTATTTCCCCCCACCTCCTTTTACCCTTT
TATTCCCTTTCTTTACCCCCCCCCACAATATATCTTGAATTACTTTCTTC
TCTTCTACCACTTTTTTTATTATTCTCATATAACAACCACCCCCTCCCTT
ATATTTCCCTAACGACCTCTACCC
TTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXTCTTTCCATTTCAGTCATCCACACGGTTAATAGAA
GGCATTGTCCTAAGGGACTCATGTCATCCTGCATTGCTCTCTCTGTATCC
CAGCCTCTTCCCCCTCAAGTCCCCATCTTTCCTTCCCCATCTCCTTCCCA
CTCATCCCTTCCCCGCTGGATCAGAGTAGGCCAGCCCTGTCAGTAACTGG
CCTGTGAGGATGGATCTCAACCCTAGCTCCAGAACACTGTGGTTGCGAAG
TGACCCCTAGTGTTCTCTCACAAAGGTCACCTACTTTGGTTCTTAACCTT
GTCTTCAAATGCAGGAAGAGTATGGTAACTGGACCAGGCTTGGAGTTTGA
AGCTAGCCCCACCTACATATTGAGATCCTGCGTCAACGATTAAATAAACG
GACCATGGAGATGCATGTATGGTCGAAGGTCTTGACACACCACTGTGATG
CCCTAATCTTTATATTTTAGTGCCCATTTCAAAACCATCATGTGTCATAT
TGCTCCCCAGGCATGTGTGGCTTGAGGAGAATGGTATATCTGTCCTTCCT
TCTGATCATTTTACCTCGTCCTATTTGCGTAGCCTAGATTCCTTAATAAA
TTGTTGACTCATACATCTTGTCTATAGCCTGCCGTACCTGATACCTGTAT
TTTCATTTCAGCCCGGCGGTAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no113_h16.b1 MSMg01no113_h16.b1 CHROMAT_FILE:
MSMg01no113_h16.b1 PHD_FILE: MSMg01no113_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:55 2005
         (246 letters)



>mm_chr11_76802022_76802667
          Length = 646

 Score =  429 bits (222), Expect = e-125
 Identities = 240/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctgcctctacctcccaggtgctgagacagaagtcacaagccaccaccatactgggtcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cctgcctctacctcccaggtgctgagacagaagtcacaagccaccaccatactgggtcat 310

                                                                       
Query: 61  gtactttatcttaatttggtatctgatttgcattgtatatgtaggactgctgtatgatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gtactttatcttaatttggtatctgatttgcattgtatatgtaggactgctgtatgatgt 250

                                                                       
Query: 121 cctgtgtatgtacaggcaaacagacatgcacacaccattccgacttcccattggtcctct 180
           | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 249 catgtgtatgtacaggtaaacagacatgcacacaccattccgacttcccgttggtcctct 190

                                                                       
Query: 181 ccttccaccttgagtcctggtgaccgaactcaggcattagactcgccctccaggcacctt 240
           |||||||||||||||||||| |||||||||||||||||||||||||||  ||||||||||
Sbjct: 189 ccttccaccttgagtcctggggaccgaactcaggcattagactcgcccagcaggcacctt 130

                 
Query: 241 tctcag 246
           ||||||
Sbjct: 129 tctcag 124


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no113_h16.g1 MSMg01no113_h16.g1 CHROMAT_FILE:
MSMg01no113_h16.g1 PHD_FILE: MSMg01no113_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:18:55 2005
         (299 letters)



>mm_chr11_76707529_76708227
          Length = 699

 Score =  524 bits (271), Expect = e-153
 Identities = 292/299 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttccatttcagtcatccacacggttaatagaaggcattgtcctaagggactcatgtc 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 201 tctttccatttcagtcatccacacggataatagaaggcattgtcctaagggactcatgtc 260

                                                                       
Query: 61  atcctgcattgctctctctgtatcccagcctcttccccctcaagtccccatctttccttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atcctgcattgctctctctgtatcccagcctcttccccctcaagtccccatctttccttc 320

                                                                       
Query: 121 cccatctccttcccactcatcccttccccgctggatcagagtaggccagccctgtcagta 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 cccatctccttcccacttatcccttccccgctggatcagagtaggccagtcctgtcagta 380

                                                                       
Query: 181 actggcctgtgaggatggatctcaaccctagctccagaacactgtggttgcgaagtgacc 240
           ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 381 actggcctgtgaggatggatctcaaccctagctccagaacattgtgggtgcgaagtgacc 440

                                                                      
Query: 241 cctagtgttctctcacaaaggtcacctactttggttcttaaccttgtcttcaaatgcag 299
           ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cctagtggtcactcacaaaggtcacctactttggttcttaaccttgtcttcaaatgcag 499


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 299
Length of database: 699
Length adjustment: 9
Effective length of query: 290
Effective length of database: 690
Effective search space:   200100
Effective search space used:   200100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)