XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCACATTT
GGAAGTCAGTTTAATAACTTATACCTGCTTTTTAGGGTCCAATGTGTGAC
TTGCTGTGGTCAGATCCAGATGACCGTGGTGGCTGGGGGATATCTCCTCG
GGGAGCTGGTTATACCTTTGGCCAAGATATTTCTGAGACATTTAATCATG
CCAATGGCCTCACGTTGGTGTCCAGAGCTCACCAGCTGGTGATGGAGGTA
TGTTCTTTTCTTGAAACCTGTCAAATTAACTGTAGTAACTGAAGGAAAGG
AGTTTGACACTGATGCTGTCAGCAAGACAGAGTCTACCATGGGAGCTAAA
CCCTCTTCAGTAGATGGACAGTCAGAGGAAAGTCAGATCCATGGCTGATA
GTGGGCATCCACTTAATGACTCGGAGGGACTTGGGATTAATGATGAAAGG
ATGAAGATGCAGAGCGATTGAGGAAGGGTATAATATATCACAGTGGTTTA
TTTCACATTATCTGGTTTGTTTCTTTATAGGAAAAGAAAGAAACATCAAA
ATGTTGATGCCCTTTAGATAACTGGCTTGTAGGTGATTTGAAAGAAGCCT
TTCCTCTGGTAGGGGTCTTACCTTACAACATTGACTGCCATACTTTGAGA
ATGAGAACATGGAGCATTCCAACTATGGCAGTGGGCAATCTCTTATTCTA
TAAGAGTTTGGTGTCACTACTGATGCCCCGCCAAGCATAGTGGCGCA

NNNTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGAGGAAC
GGTGGTACCGGTAAGTCTCCCAAATTGATCCCCAGGTTAAAGGGGGATAT
GTTTTTTAAGAAAAAAAAAAGGGAGGAAAAATAAAAGGAATCAGTGATAA
AGAAAAGGAAATAGTAAAGGGAAGGAAAAGGGAAAGAAAAGGGGAAAAAA
AGGAAAGAGAAAAGGAAAAGAGAGAAGAGAAGGAAAGAAAGGATTGAGAC
GATAAGGTTCCCGGCTTTGGGACAAGTTAAGGTTCATGAGTTATGCTTTT
TTCTCCCATTGACCCTTTGAGGTCTGATAGTTTTGGTCTTGTTTGTTCTG
ATATATGGACTCTGTTACTGTTTGAAACTGTGTGTAGAGGCAGTCAAGAC
AGGTCAGAAAATCCTTACAGAGCAACAAGAAAGTATGTCAGAAGAGGAGA
AGGGCTTAAAAAGAAAAAGGAAAAAGAAAGGAGACACAGTGTTATCAGGT
AGACCAGAAGAAGAAAGTATACAGCAAGCTTATGGCTTGCTTAATGAAAC
TTTAAAAAATAATGGTTTGAGTATTGCACCAGAAAAGGTACAGCAGTCTA
ATGTTAGTCATTTTCTAGGAGCCACTATTACTTTACGAGGCGTTACCCCT
CAAAAGATTAGTATTAGATAAGAT

Query= MSMg01no115_g22.b1 MSMg01no115_g22.b1 CHROMAT_FILE:
MSMg01no115_g22.b1 PHD_FILE: MSMg01no115_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:21:23 2005
         (574 letters)



>mm_chr11_51932406_51933379
          Length = 974

 Score = 1031 bits (533), Expect = 0.0
 Identities = 565/583 (96%), Gaps = 13/583 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccacatttggaagtcagtttaataacttatacctgctttttagggtccaatgtgt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 192 gaattccacatttggaagtcagtttaataacttatacctgctttttagggtccaatgtgt 251

                                                                       
Query: 65  gacttgctgtggtcagatccagatgaccgtggtggctgggggatatctcctcggggagct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 gacttgctgtggtcagatccagatgaccgtggtggctgggggatatctcctcggggagct 311

                                                                       
Query: 125 ggttatacctttggccaagatatttctgagacatttaatcatgccaatggcctcacgttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ggttatacctttggccaagatatttctgagacatttaatcatgccaatggcctcacgttg 371

                                                                       
Query: 185 gtgtccagagctcaccagctggtgatggaggtatgttcttttcttgaaacctgtcaaatt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gtgtccagagctcaccagctggtgatggaggtatgttcttttcttgaaacctgtcaaatt 431

                                                                       
Query: 245 aactgtagtaactgaaggaaaggagtttgacactgatgctgtcagcaaga---c------ 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |      
Sbjct: 432 aactgtagtaactgaaggaaaggagtttgacactgatgctgtcagcaagatgtcctttat 491

                                                                       
Query: 296 ----agagtctaccatgggagctaaaccctcttcagtagatggacagtcagaggaaagtc 351
               ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tcctagagtctgccatgggagctaaaccctcttcagtagatggacagtcagaggaaagtc 551

                                                                       
Query: 352 agatccatggctgatagtgggcatccacttaatgactcggagggacttgggattaatgat 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agatccatggctgatagtgggcatccacttaatgactcggagggacttgggattaatgat 611

                                                                       
Query: 412 gaaaggatgaagatgcagagcgattgaggaagggtataatatatcacagtggtttatttc 471
           ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct: 612 gaaaggatgaagatgcagagcgaatgaggaagggtataatatatcgcagtggtttatttc 671

                                                                       
Query: 472 acattatctggtttgtttctttataggaaaagaaagaaacatcaaaatgttgatgccctt 531
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 acattatctagtttgtttctttataggaaaagaaagaaacatcaaaatgttgatgccctt 731

                                                      
Query: 532 tagataactggcttgtaggtgatttgaaagaagcctttcctct 574
           |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 732 tagataactggcttgtagatgatttgaaagaagcctttcctct 774


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space:   543696
Effective search space used:   543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)