BAC Information

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BAC

Clone NameMSMg01-115P11
Chromosome11 (Build37)
Map Location 10,284,156 - 10,284,489
singlet/doubletsinglet
Overlap genenone
Upstream geneAbca13, LOC665435, LOC382483
Downstream geneVwc2, Zpbp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-115P11.T7 (MSMg01no115_p11.b1)MSMg01-115P11.TJ (MSMg01no115_p11.g1)
ACCAG327465AG327466
length759726
length of high quality
(start - end)
341 (36 - 376)521 (80 - 600)
definitionCHROMAT_FILE: MSMg01no115_p11.b1 PHD_FILE: MSMg01no115_p11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:03 2005CHROMAT_FILE: MSMg01no115_p11.g1 PHD_FILE: MSMg01no115_p11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:22:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACTCT
GCAGACCAGGCTGGCCTTGAACTCAGAAATCAGCCTGCCTCTGCCTCCCA
AGTGCTGTGATTAAAGGCATGCACCACAACTGCCCATTTTTATGTTCCTG
TGTTCATATTTATATAATGTTTGTATTTGTAAATTAAGAGACACTCCAGC
AAGTCATGAGAAGAAATCCCCTTGAAATATTCATGAATATGTCTTAATCT
AAAGATTCAAGAAACAATAAAAGGAATTGATTTCCTTGTCTAAGAAAGTA
TTTCTCAGTTAATGTTAAGAAACATAAAGTTGACATATTTGTGGTTGCTT
TTGGTTTTTGTTGGTTTATTTTGTTTGCATGCCACCCTGNNCTCCCNCCN
NCTCCCCCCCCCCCCTTTTCCTCTCTTCCCCCCCCCCCCCCCTTCCTTCC
CTTTCCCCCCCCCCCCCCCCCCCTCCCTCTCCCTCCCCCTCTCCCTCTTC
CCTTCCCTCCTCCCCTCCTTCCTTCTCCTTTTTCCCCCCTTTNCCCCCCC
CCCCCCCCCCCCCCTCCCNTCTCCTCTTTCCTCCCTTTTTTTTTCCCCCC
CCCCCCTCTCCTCCTCTCCCTCCTCCTTCTTCCTCTCTTCCCCCCTCCCC
CTCCCCTTTTTTTTCCCTCTCCCTCCTTCTCCCCCCCTTTTCCCTTCTCC
CCCTCTTNCCCCCCTTTTCTCCCCTCTCTTTCCCTTCCCCCCTCTTTCTC
CTCTCCCTT
NNNAACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAGAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAAT
GCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTA
AGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTG
GAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGT
AAGAAGGACACATGCTCTACTATGCCCATAGCAGCCTTATTTATAATAGC
CAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAAAGGAATGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAAGAAACTCACACAATATGTATTCACTG
ATTAGTGGATATTACGCCCCAATCTAGCATACCCAAGCAATAAAATACAA
TTTGCTAACCCCTGTAACTCCAGATC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no115_p11.b1 MSMg01no115_p11.b1 CHROMAT_FILE:
MSMg01no115_p11.b1 PHD_FILE: MSMg01no115_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:03 2005
         (341 letters)



>mm_chr11_10283856_10284596
          Length = 741

 Score =  615 bits (318), Expect = e-180
 Identities = 330/334 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactctgcagaccaggctggccttgaactcagaaatcagcctgcctctgcctcc 63
           |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 634 ggaactcactctgcagaccaggcaggccttgaactcagaaatcagcctgcctctgcctcc 575

                                                                       
Query: 64  caagtgctgtgattaaaggcatgcaccacaactgcccatttttatgttcctgtgttcata 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 caagtgctgtgattaaaggcatgcaccacaactgcccatttttatgttcctgtgttcata 515

                                                                       
Query: 124 tttatataatgtttgtatttgtaaattaagagacactccagcaagtcatgagaagaaatc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 tttatataatgtttgtatttgtaaattaagagacactccagcaagtcatgagaagaaatc 455

                                                                       
Query: 184 cccttgaaatattcatgaatatgtcttaatctaaagattcaagaaacaataaaaggaatt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 cccttgaaatattcatgaatatgtcttaatctaaagattcaagaaacaataaaaggaatt 395

                                                                       
Query: 244 gatttccttgtctaagaaagtatttctcagttaatgttaagaaacataaagttgacatat 303
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 394 gatttccttgtctaagaaagtatttctcagttaatgttaagaaaaataaagttgacatat 335

                                             
Query: 304 ttgtggttgcttttggtttttgttggtttatttt 337
           ||||||||| ||||||||||||||||||||||||
Sbjct: 334 ttgtggttgtttttggtttttgttggtttatttt 301


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 341
Length of database: 741
Length adjustment: 9
Effective length of query: 332
Effective length of database: 732
Effective search space:   243024
Effective search space used:   243024
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)