Query= MSMg01no116_i06.b1 MSMg01no116_i06.b1 CHROMAT_FILE:
MSMg01no116_i06.b1 PHD_FILE: MSMg01no116_i06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:47 2005
(406 letters)
>mm_chr11_3936470_3937275
Length = 806
Score = 777 bits (402), Expect = 0.0
Identities = 405/406 (99%)
Strand = Plus / Minus
Query: 1 gatcccctgggatttttttttctttctgaaaacctataactgtttttaaaataaagtttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 gatcccctgggatttttttttctttctgaaaacctataactgtttttaaaataaagtttc 547
Query: 61 taaaactggtttttaaaaagcacagagagaactgaagcgaggagcagcctccgggacagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 taaaactggtttttaaaaagcacagagagaactgaagcgaggagcagcctccgggacagg 487
Query: 121 cttcctgcgtgtaggcctcatggcctcatctttaactcagcatcttgaagacagagacca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cttcctgcgtgtaggcctcatggcctcatctttaactcagcatcttgaagacagagacca 427
Query: 181 tggccctgcccacaacacaggccagcttttcgccaggactgtgccagcacatgtggagtg 240
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 426 tggccctgcccacaacacaggccagcttttcgccaggactgtgccagcacgtgtggagtg 367
Query: 241 gggactcacaagcctgtcttgctgacaactatttaaaccaggcaccttgtgcccacattc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 gggactcacaagcctgtcttgctgacaactatttaaaccaggcaccttgtgcccacattc 307
Query: 301 tggaatgacttacccaaaatacaaactctatcctgtgagctaaaatcatttccccatcca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tggaatgacttacccaaaatacaaactctatcctgtgagctaaaatcatttccccatcca 247
Query: 361 ccaagccctgtgccatttctggtattacttctccagacttctgtga 406
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 ccaagccctgtgccatttctggtattacttctccagacttctgtga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space: 316409
Effective search space used: 316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no116_i06.g1 MSMg01no116_i06.g1 CHROMAT_FILE:
MSMg01no116_i06.g1 PHD_FILE: MSMg01no116_i06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:22:47 2005
(461 letters)
>mm_chr11_3864408_3865272
Length = 865
Score = 857 bits (443), Expect = 0.0
Identities = 458/465 (98%), Gaps = 4/465 (0%)
Strand = Plus / Plus
Query: 1 tcggcactcagagaaaggagagactaatatcagcgtgcagctgtagcttccagccgtctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcggcactcagagaaaggagagactaatatcagcgtgcagctgtagcttccagccgtctc 260
Query: 61 ttagccgtctctgtgtttgatggtttatatggggttaggcgttgtcacaatcttatattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagccgtctctgtgtttgatggtttatatggggttaggcgttgtcacaatcttatattt 320
Query: 121 taggatgacccttttgttcctttacaggctctggttatgatagttttatctttagcagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggatgacccttttgttcctttacaggctctggttatgatagttttatctttagcagat 380
Query: 181 ggaacttgctatccgtgtgatattggtggtggtcaattctcaagggagaaaatgaccttt 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 ggaacttgctatccgtgtgatattggtggtgctcaattctcaagggagaaaatgaccttt 440
Query: 241 ttttttt----ctttataaaaggggaaagggtgagcaggttaaaagcagaagtcagtaca 296
||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 441 tttttttttttctttagaaaaggggaaagggtgagcaggttaaaagcagaagtcagtgca 500
Query: 297 gttttagctctgttgtctcagattagagacagtttcttcttcctatgcaaccttgtttcc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gttttagctctgttgtctcagattagagacagtttcttcttcctatgcaaccttgtttcc 560
Query: 357 caagtttaagcttcttaatcataattaatgtgaaagcttgctgtttttcttttttcattc 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caagtttaagcttcttaatcataattaatgtgaaagcttgctgtttttcttttttcattc 620
Query: 417 agaagtgcttagcagagaaaacagaagtgaattccacggccagta 461
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agaagtgcttagcagagaaaacagaagtgaattccacggccagta 665
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 461
Length of database: 865
Length adjustment: 10
Effective length of query: 451
Effective length of database: 855
Effective search space: 385605
Effective search space used: 385605
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
