Query= MSMg01no118_g22.b1 MSMg01no118_g22.b1 CHROMAT_FILE:
MSMg01no118_g22.b1 PHD_FILE: MSMg01no118_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:16 2005
(596 letters)
>mm_chr11_108414603_108415594
Length = 992
Score = 1056 bits (546), Expect = 0.0
Identities = 581/598 (97%), Gaps = 11/598 (1%)
Strand = Plus / Plus
Query: 5 gaattcagcaaactcatttcaaagcagcttatatatttagcttcttgagttttattacac 64
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagcaaactcattttaaagcagcttatatatttagcttcttgagttttattacac 264
Query: 65 ttacaattccacttttccagtgaaatgtggtgaagtaaacatgattgtgggagtgaaatc 124
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 265 ttacaattccacttttccagtgaaatgtggtgaagtaaacatgattgggggagtgaaatc 324
Query: 125 cactaacaatgtaaagccttacttcatttagtgtttacagtaaacacaatactttaatgc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 cactaacaatgtaaagccttacttcatttagtgtttacagtaaacacaatactttaatac 384
Query: 185 caagtcttcaaaagactcctgtgtggctgtgtgtgatctgctaggagaggtggagtttca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caagtcttcaaaagactcctgtgtggctgtgtgtgatctgctaggagaggtggagtttca 444
Query: 245 gaaatgaagcaacttgcccagcatctcataaatgatgtgttcctgagctgagcttcatac 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 gaaatgaagcaacttgcccagcatctcataaatgatgtgttcctgagctgagcttcgtac 504
Query: 305 ctgggccttccgagtctaaatctcctatccagaaaaaaaaaaaaaagttaaattttactt 364
|||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 505 ctgggccttctgagtctaaatctcctatccagaaaaaaaaaa----gttaaattttactt 560
Query: 365 tctctgtcaccaaaagttttttttttttaattatttaattttttttt------attttta 418
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 561 tctctgtcaccaaa-gttttttttttttaattatttaatttttttttttatttattttta 619
Query: 419 atttgcctgttgttgttgttcgaggcagggtttctctatgtagccttaactggttcagaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 atttgcctgttgttgttgttcgaggcagggtttctctatgtagccttaactggttcagaa 679
Query: 479 cttatgtagcccagttgactcatcttgcaaatgatcttactttcctttccttccaaatac 538
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cttaggtagcccagttgactcatcttgcaaatgatcttactttcctttccttccaaatac 739
Query: 539 taggattctattctaggcttgagttaccactctaaccttgacaaaatagttttccttt 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taggattctattctaggcttgagttaccactctaaccttgacaaaatagttttccttt 797
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 992
Length adjustment: 10
Effective length of query: 586
Effective length of database: 982
Effective search space: 575452
Effective search space used: 575452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no118_g22.g1 MSMg01no118_g22.g1 CHROMAT_FILE:
MSMg01no118_g22.g1 PHD_FILE: MSMg01no118_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:17 2005
(409 letters)
>mm_chr11_108552809_108553616
Length = 808
Score = 739 bits (382), Expect = 0.0
Identities = 398/406 (98%), Gaps = 6/406 (1%)
Strand = Plus / Minus
Query: 1 tcatccaatagaccaatatttaaaattatttaaaagaattaattcactgagagtgccaaa 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 tcatccaacagaccaatatttaaaattatttaaaagaattaattcactgagagtgccaaa 389
Query: 61 tatcacaagaatgctttaaaaatgctaattttttgaagtgtgagaaattagtacatttag 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 tatcacaagaatgcttt-aaaatgctaattttttgaagtgtgagaaattagtacatttag 330
Query: 121 ctggatgatagagaagaaaatatgccgagttttatttctaaaatatgatttaaaaacttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ctggatgatagagaagaaaatatgccgagttttatttctaaaatatgatttaaaaacttt 270
Query: 181 tacaagtaaccaaaatgaatacaatacaattgaatataatatacaatttaaaatttttat 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tacaagtaaccaaaatg-----aatacaattgaatataatatacaatttaaaatttttat 215
Query: 241 aatttttatttttcaaattgtaatttttcaaaataatggtgacttttcaattcttaaaga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 aatttttatttttcaaattgtaatttttcaaaataatggtgacttttcaattcttaaaga 155
Query: 301 ctaatctgtaacttaaatataggggtttaaaagcataactttttctatcttctttttatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 154 ctaatctgtaacttaaatataggggtttaaaagcataactttttctatcttctttttatg 95
Query: 361 tataatgtttttgtatgtatgtatatatgtatgtatgtatgtatgt 406
|||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 94 tataatgtttttgtatgtatgtatgtatgtatgtatgtatgtatgt 49
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 808
Length adjustment: 9
Effective length of query: 400
Effective length of database: 799
Effective search space: 319600
Effective search space used: 319600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
