BAC Information

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BAC

Clone NameMSMg01-118K10
Chromosome11 (Build37)
Map Location 12,096,599 - 12,097,102
singlet/doubletsinglet
Overlap genenone
Upstream geneVwc2, Zpbp, LOC625132, EG432534, 4930415F15Rik, Ikzf1, Fignl1, Ddc, Grb10
Downstream geneCobl, LOC627244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-118K10.T7 (MSMg01no118_k10.b1)MSMg01-118K10.TJ (MSMg01no118_k10.g1)
ACCAG329469AG329470
length7651,275
length of high quality
(start - end)
512 (108 - 619)---
definitionCHROMAT_FILE: MSMg01no118_k10.b1 PHD_FILE: MSMg01no118_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:34 2005CHROMAT_FILE: MSMg01no118_k10.g1 PHD_FILE: MSMg01no118_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:25:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCGATCCTTCCCTAAATTCTGGCGCCGTGGNTCCTTCCCCNNNNCCCCG
ANNNNNNNNGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTGTTGGTTGCTTTTATAATTCTTTGTGTATTGA
ATAATTTTTGGCTGGAGCCAGATATTGTGAATTTTATAATATAAGTACCT
TAGCTTTTATTATATAGCTTTAATGGCTGTTAATTTTGACTAGAATGCAA
ATGGCTTCTCTAGACCCATATTGCTAACTATCTCTTGAGAGGGAACTTAA
ATATTGGATCCATTTTCACGCTTTATGGGGCTCAAGACACAGCCAGAGCT
GATGTACAGGATCTGGGCTCTTTTGTCTGACTCTGTCCTTCTTGGAAAAT
ACTCTCAAATTGCAGAGACTGATATAATTCTAAATTTTACACTTTAATTC
ATCCAAAAGCTGGCATGTCAGTTTCCTGTTTGAGTTTCATCCATTGAGTA
TTCTATAGGTGTCACCTATATGCCAGAATCCTGTAGTTAAGAAATGCACC
CAGGGAAAACCCATTATCCTACCTGTAAAATCCCTTCCAAAACCAGCCTT
TCCTGTTTATTCTCTAGAATTTTAAATAGCTACTTAGTATATTTAGCCAG
ACAAAAAATTATTATTATCTGAAAGAGGGTTCAACCTGACAGCTACCTAA
AGAAAATCTTTTTTACTTTAAGCCAAATTTAAATGTTTTAAACATTTTGT
TGTCTATAAGGCACA
TTTAATTTAATATTNNNNTNNNCTNNTATTATNTATCTTNNNTTCTTTTC
ATACATTTCAAAATTTTATTCAATTAATATATATTATCATCATTTTATTT
TACATATTTTTACTCAATATCTTTTTATCCTCCACAATCATAAATAAAAA
ATAAACATTACATTACAACCCTTATCTATTACATTTTTTTATATAATATC
TTCCGAACTCTTTATATCTACATTATCACCTTGATCTTTTATAGTTCCTC
TGACCTCCTTAATACATACCTGTTGAATTATAGATATATATCCTGTTTAC
ATACTTTTAACAACACTTATTTACTCCGTGCTCCTACCGCGTCACATTCC
ACCATCTACTCTCTCATAGTCCGTTTATGCGTATCATGGTCTGTATTTTA
TTTTGCAGTCGTAGGTCTTCGTGCGTTTTTTTGGTCCGCTNATTGTTACT
CATATTCCTATTGTGCCGTCCTGCTACGCCTCGGTGCCCGCCCAGCGGAC
TTGTAGTACAGTCTCAGTTCACAGATAATGATAANGCGCAGCTAGTCTTT
GGCGCNGATCATCGTTGCTTCACGCCGTTTGCTAGCTCCCCACTTGACTA
CTGCCGCCTTTATTAGCGCACCACACACTGAGGTGCGTTTGTTATTTGTT
TTATGGCTTTGCTTTACATGCGGNCTTTCCGTGTATTCGCCAACGTGTCA
GGTTGTATCGATATACATATCATATGCTTCGATGCTATCGTATTCGCGCA
ATCACGTGATCTACGCGTTATTTACGTTAACGATCATCTGTCTCTCCTAG
TGCGTCGCGCGACGTGGCAGTGGGATTACTGCATGCGTTAGATGATGTAC
AATTGTATGTGCATTACACTGCGTGTCGCTAGTCGGTGGCTGAGCGTTGT
CGTAGTTATGTTCGCTGTGTTGTGTCGCGCGTACGGTGCACATGCATTCT
TGGCGGTGCCGATAGTGAGTGAGCGTGTGCAGTTATGCAGTTACTGTACG
TTGCTTACGATGACTCGGAGGATTTACTGTATTGTGATATTGCGCGCAAC
GCATCTACACAGCCTNATCGCAATNTAATGGCTGTTCACCCGTGTGGTAT
CANTANCCTGCATGATCTAGATACTTATACGTCTTATTACTCGCATATGT
AATAATCGCTTACGACAGACATACGATCACCGAAAATCTGATCGCGTGTG
CGACTAAGTGTGATAGAACACACATATCTAGTGTAGTCCGCAGTTATATG
NTATTATCCATGTCACACTGCTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no118_k10.b1 MSMg01no118_k10.b1 CHROMAT_FILE:
MSMg01no118_k10.b1 PHD_FILE: MSMg01no118_k10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:25:34 2005
         (512 letters)



>mm_chr11_12096395_12097302
          Length = 908

 Score =  893 bits (462), Expect = 0.0
 Identities = 496/510 (97%), Gaps = 8/510 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgttggttgc-ttttataattctttgtgtattgaataatttttggctggagcca 63
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgttggttgtattttataattctttgtgtattgaataatttttggctggagcca 264

                                                                       
Query: 64  gatattgtgaattttataatataagtaccttagcttttattatatagctttaatggctgt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gatattgtgaattttataatataagtaccttagcttttattatatagctttaatggctgt 324

                                                                       
Query: 124 taattttgactagaatgcaaatggcttctctagacccatattgctaactatctcttgaga 183
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 taattttgactagtatgcaaatggcttctctagacccatattgctaactatctcttgaga 384

                                                                       
Query: 184 gggaacttaaatattggatccattttcacgctttatggggctcaagacacagccagagct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggaacttaaatattggatccattttcacgctttatggggctcaagacacagccagagct 444

                                                                       
Query: 244 gatgtacaggatctgggctcttttgtctgactctgtccttcttggaaaatactctcaaat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gatgtacaggatctgggctcttttgtctgactctgtccttcttggaaaatactctcaaat 504

                                                                       
Query: 304 tgcagagactgatataattctaaattttacactttaattcatccaaaagctggcatgtca 363
           |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 505 tgcagagactgagataattctaaattttacagtttaattcatccaaaagctggcatgtca 564

                                                                       
Query: 364 gtttcctgtttgagtttcatccattg-agtattctataggtgtcacctatatgccagaat 422
           |||||||||||||||||||||||||| ||    |   |||||||||||||||||||||||
Sbjct: 565 gtttcctgtttgagtttcatccattggagg---c---aggtgtcacctatatgccagaat 618

                                                                       
Query: 423 cctgtagttaagaaatgcacccagggaaaacccattatcctacctgtaaaatcccttcca 482
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 619 cctgtagttaagaaatgcacccagggaagacccattatcctacctgtaaaatcccttcca 678

                                         
Query: 483 aaaccagcctttcctgtttattctctagaa 512
           ||||||||||||||||||||||||||||||
Sbjct: 679 aaaccagcctttcctgtttattctctagaa 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 908
Length adjustment: 10
Effective length of query: 502
Effective length of database: 898
Effective search space:   450796
Effective search space used:   450796
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)