Query= MSMg01no119_i20.b1 MSMg01no119_i20.b1 CHROMAT_FILE:
MSMg01no119_i20.b1 PHD_FILE: MSMg01no119_i20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:44 2005
(556 letters)
>mm_chr11_53544704_53545660
Length = 957
Score = 1002 bits (518), Expect = 0.0
Identities = 548/558 (98%), Gaps = 3/558 (0%)
Strand = Plus / Minus
Query: 2 gaattctttttg-ttttcgactctttaaaaag-tatatttatttattaagcctgggaagt 59
|||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct: 877 gaattctttttgtttttagactctttaaaaagttatatttatttattaagcctgggaagt 818
Query: 60 ggggcatgcgtgctccagcacacaagtggagatcagaggtccagagtcggttctccacgt 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 817 ggggcatgcgtgctccagcacacaagtggagattagaggtccagagtcggttctccacgt 758
Query: 120 ccaccatgtaggtcccagggatcaaacccaggtcatcaagttcaacagcaaacatctttg 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ccaccatgtaggtcccagggatcaaacccaggtcatcaagttcaacagcaaacatctttg 698
Query: 180 ctaactgaaccatttcactggcccactgctgagttcttcatctgtagatttggcagtggg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctaactgaaccatttcactggcccactgctgagttcttcatctgtagatttggcagtggg 638
Query: 240 ttggc-agcactggtcagtgatccaaaggtgggaggattttggagtcaggatgttcatct 298
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 637 ttggcaagcactggtcagtgatccaaaggtgggaggagcatggagtcaggatgttcatct 578
Query: 299 ttccagtccctcctcacaggaagttccagtgtccataaagggttcctctgtatatagtac 358
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 577 ttccagtccctcctcacaggaagttccagtgttcataaagggttcctctgtatatagtac 518
Query: 359 ccctgagccttctggttccactcctgcggttactaactttagataggtttctttccctac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ccctgagccttctggttccactcctgcggttactaactttagataggtttctttccctac 458
Query: 419 atcttgttctcattttaggagtcccctcagtaactactctcccaagttattcagtgtggt 478
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 457 atcttgttctcattttaggagtcccctcagtaactactcttccaagttattcagtgtggt 398
Query: 479 ggtttattttgatggtcaacttgacacaacttagaatcgccggaaacgggaagttcagat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ggtttattttgatggtcaacttgacacaacttagaatcgccggaaacgggaagttcagat 338
Query: 539 tggccggcggccatgttg 556
||||||||||||||||||
Sbjct: 337 tggccggcggccatgttg 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_i20.g1 MSMg01no119_i20.g1 CHROMAT_FILE:
MSMg01no119_i20.g1 PHD_FILE: MSMg01no119_i20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:26:44 2005
(243 letters)
>mm_chr11_53383376_53384018
Length = 643
Score = 451 bits (233), Expect = e-131
Identities = 239/243 (98%), Gaps = 4/243 (1%)
Strand = Plus / Plus
Query: 1 aggacctctggaagaacagccagtgctcttagccactgagccatcgctccagtccgacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aggacctctggaagaacagccagtgctcttagccactgagccatcgctccagtccgacct 264
Query: 61 cagattcttaataaagcttgtcaaccacttcacgcgtggttgtttgtttgtttgtttgtt 120
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 cagattcttaataaagcttgtcaaccacttcacgcgtg----tttgtttgtttgtttgtt 320
Query: 121 tgtttttgtttgtttgtttgttttttcaggcaggaacttcagctgtgtggactgttgagc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttttgtttgtttgtttgttttttcaggcaggaacttcagctgtgtggactgttgagc 380
Query: 181 taatgcctgtatactaactagttcattttctccacttgaagcatttgcttcagatgtaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taatgcctgtatactaactagttcattttctccacttgaagcatttgcttcagatgtaaa 440
Query: 241 tta 243
|||
Sbjct: 441 tta 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
