Query= MSMg01no119_o24.b1 MSMg01no119_o24.b1 CHROMAT_FILE:
MSMg01no119_o24.b1 PHD_FILE: MSMg01no119_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:13 2005
(612 letters)
>mm_chr11_79239065_79240076
Length = 1012
Score = 1110 bits (574), Expect = 0.0
Identities = 601/610 (98%)
Strand = Plus / Plus
Query: 3 ggaattctaatatacttacctcacattttctaaccgttccctcctcattgaactgtccat 62
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||
Sbjct: 203 ggaattctaatatacttagatcacattttctaaccgttccctccgcattgaactgtccat 262
Query: 63 agtagcatcatttgcccttgttctgcattataatcagacctatttctggggtcaggtggg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 agtagcatcatttgcccttgttctgcattataatcagacctatttctggggtcaggtggg 322
Query: 123 acaaatgactgtaaaatcggtgtgctcagcatctgaactgctcactctttttgctattgc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acaaatgactgtaaaatcggtgtgctcagcatctgaactgctcactctttttgctattgc 382
Query: 183 taagcgagttaacttctatagctagctccctgtgtgttcctttgatcagccttctattat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taagcgagttaacttctatagctagctccctgtgtgttcctttgatcagccttctattat 442
Query: 243 cattggctctgcctgtaaccatattagaagagaaagttaaaatgagagtggttagtatcc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cattggctctgcctgtaaccatattagaagagaaagttaaaatgagagtggttagtatcc 502
Query: 303 agttattgccatagctctgctttttattcccgcaaatggtattatattcctgagagcttc 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 agttattgccatagctctgctttttattcccgcaaatggtattatattcctgagagcttc 562
Query: 363 actttggtgcacagagtaattaagaactaatgtaaatagtgtaaccaggtgagagtaaag 422
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 563 actttggtgcacagagtaataaagaactgatgtaaatagtgtaaccaggtgagagtaaag 622
Query: 423 gattaaaagcacaggcgctggggaaggactgctttacttagtctgggcaccttaggcttc 482
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 623 gattaaaagcacaggctctggggaaggactgctttacttagtctcggcaccttaggcttc 682
Query: 483 tcatctgaaaaggtaatcagtaatatagttcctacctcagagagaccattaagagtgaaa 542
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 tcatctgaaaaggtaggcagtaatatagttcctacctcagagagaccattaagagtgaaa 742
Query: 543 tagattgtgtaaggcttttaggaacaattcgtagtgtatagtaagcaataaaattagtta 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tagattgtgtaaggcttttaggaacaattcgtagtgtatagtaagcaataaaattagtta 802
Query: 603 ctgctatttt 612
||||||||||
Sbjct: 803 ctgctatttt 812
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space: 603204
Effective search space used: 603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no119_o24.g1 MSMg01no119_o24.g1 CHROMAT_FILE:
MSMg01no119_o24.g1 PHD_FILE: MSMg01no119_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:27:13 2005
(616 letters)
>mm_chr11_79372368_79373384
Length = 1017
Score = 642 bits (332), Expect = 0.0
Identities = 338/340 (99%), Gaps = 1/340 (0%)
Strand = Plus / Minus
Query: 278 tcaaaagtcacaagaatttgttacatcaaaacagtaaatattggcaatctagctgggcag 337
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1017 tcaaaagtcacaagaatttgttacatcaaaacagtaaatattggcaatctagctgggcag 958
Query: 338 tgattgcacatgcctttaatcccagcactcgggaggcagaggcaggtggatttctgagtt 397
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 957 tgattgcacacgcctttaatcccagcactcgggaggcagaggcaggtggatttctgagtt 898
Query: 398 cgaggccagcctggtctacagagtgagttccagaatagccagggctacacagagaaaaaa 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 cgaggccagcctggtctacagagtgagttccagaatagccagggctacacagagaaaaaa 838
Query: 458 ccctgtctcaaaaaaacaaacaaac-aaaaaaagttggcaatctaaatagtttcaattaa 516
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 837 ccctgtctcaaaaaaacaaacaaacaaaaaaaagttggcaatctaaatagtttcaattaa 778
Query: 517 ttttccaagagggaaagtaactaaccatttttcacactaacaataatgtgaaaatttata 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 ttttccaagagggaaagtaactaaccatttttcacactaacaataatgtgaaaatttata 718
Query: 577 taaaataaagataaactaaccaagcaatttttttgtgttg 616
||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 taaaataaagataaactaaccaagcaatttttttgtgttg 678
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1017
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1007
Effective search space: 610242
Effective search space used: 610242
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
