BAC Information

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BAC

Clone NameMSMg01-120L16
Chromosome11 (Build37)
Map Location 3,585,499 - 3,586,047
singlet/doubletsinglet
Overlap geneMorc2a
Upstream geneLOC236604, Sfi1, LOC623257, Eif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1
Downstream geneLOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-120L16.T7 (MSMg01no120_l16.b1)MSMg01-120L16.TJ (MSMg01no120_l16.g1)
ACCAG331024AG331025
length709786
length of high quality
(start - end)
553 (46 - 598)92 (130 - 221)
definitionCHROMAT_FILE: MSMg01no120_l16.b1 PHD_FILE: MSMg01no120_l16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:16 2005CHROMAT_FILE: MSMg01no120_l16.g1 PHD_FILE: MSMg01no120_l16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATAATTCCCAGCTCCTTCTTGGAGATGGGGAAACTTGGAGGTAAG
AAATACCGCAAGCAATTTCTAAGCAGGAAGAGAGGGGTTGGAACTCAGAA
TAGCATGGGAAGAGTAAAGAATTAGTGTCAGCCTTAAGGAAAAGGATAAA
GAAACACAAACCGAAGAATCTGGACCAGGAGATCAATAGTCTCATGGCTG
GGACTGGTGGCAGTGGTATCAGGCTCAATGGGAAGACCATCAGAGGTGGA
AGGCTCAGGCAAGGCCATAGCCTGCCGGGCCACCATAGCCTCCTCCTCCT
CTCCACCTTCTTGCTGTGTGTCAGGGCTCTGATGCTCTGGGGAAGGTGGC
TTCATCAATCGTACATCTTCACTGCCTTTCTCCACCCTACGGGGGACACA
GAGCTTATAGTATCTGTCCTAGGATCCTAATAGGCTGCTAGGAGGGAACA
CGGGGGTACCTCCTCTCTTTGCCCTAGCTGACTTCTGCTATTCTGTTCTC
CCAGAAGAGGGCATTACCAGCGGTCTCTTGGTGTTGTATCTGTGGGCACA
TAGTCAAACTTCACTTTCCATCGAACCGCATTCTTGCCCACCTCCACAGC
TGTGACGCGGCCTGTGTACCACTCACGGTTCACACGGACCTCTACATGAA
GTCCTTTAG
TTTTTAACTGGGGAATACGGTCCTCATTAGTACAACCCCTCGCCCATTTG
TTTTTCGTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGTCTGGGGGTCAAAGCA
TAGTCCCAGCTTTATCTTCTGTCCCTTTCCTTCATCCCACCCCCTCTTAT
GGCTTACCTGGTATCATATTTGTTGGTACCCTCGTCAAACTTGAAAGTGG
GAGCGTAGATAAAGGGCCCTTCCTGGAAACCTTTCAAGATGGGCCAAGCG
TTCTTGGCCATGTAGAGCTGAGAGGATCCAGATGAGTAGAGTTTGGGCCC
CGTACAGCATCTATAGATGGGATGGGATATATGAGGTCAAAGGCAGACAC
CGGAGGTATTCGTTGAGTTCACGTCCTAGTAAGGGGACGCCGATTACTAC
CTTCCTCGCCCTTCTCCTCTAGCTGATGGAATTGTTTGTTGTCTACGCCG
AATTTGACACCGTGTAGGTTATAGCTCTGCGTGTTAAAGGCCAGGCCCCC
CCCCCATACTACTAGATCGCTCCCTGCTTGTTCCACCCCCCCCAGTGTTT
TTATGGGAAAGCACGCCATACCCCCTTTCCCCCCCCCCTTGTTTTTCTTC
CCCCCCATCTAACCTTCCTTATCGCCCGATTAGGTGTTTGAAAAAACCGG
TTGGTGAAAGGGGGGTAACTACCCGAGTGGCATAAACCCGTTATGCTATG
TATCCTTAAATTTACCCGCACCCTTATTGTTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no120_l16.b1 MSMg01no120_l16.b1 CHROMAT_FILE:
MSMg01no120_l16.b1 PHD_FILE: MSMg01no120_l16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:16 2005
         (553 letters)



>mm_chr11_3585295_3586247
          Length = 953

 Score = 1031 bits (533), Expect = 0.0
 Identities = 546/551 (99%), Gaps = 4/551 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcataattc-c-cagctccttcttggagatggggaaacttggaggtaagaaatacc 62
           ||||||||||  | | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gaattcataa--cactcagctccttcttggagatggggaaacttggaggtaagaaatacc 696

                                                                       
Query: 63  gcaagcaatttctaagcaggaagagaggggttggaactcagaatagcatgggaagagtaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 gcaagcaatttctaagcaggaagagaggggttggaactcagaatagcatgggaagagtaa 636

                                                                       
Query: 123 agaattagtgtcagccttaaggaaaaggataaagaaacacaaaccgaagaatctggacca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 agaattagtgtcagccttaaggaaaaggataaagaaacacaaaccgaagaatctggacca 576

                                                                       
Query: 183 ggagatcaatagtctcatggctgggactggtggcagtggtatcaggctcaatgggaagac 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 ggagatcaatagtctcatggctgggactggtggcagtggtatcaggctcaatgggaagac 516

                                                                       
Query: 243 catcagaggtggaaggctcaggcaaggccatagcctgccgggccaccatagcctcctcct 302
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 515 catcagaggtggaaggctcaggcaaggccacagcctgccgggccaccatagcctcctcct 456

                                                                       
Query: 303 cctctccaccttcttgctgtgtgtcagggctctgatgctctggggaaggtggcttcatca 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 cctctccaccttcttgctgtgtgtcagggctctgatgctctggggaaggtggcttcatca 396

                                                                       
Query: 363 atcgtacatcttcactgcctttctccaccctacgggggacacagagcttatagtatctgt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 atcgtacatcttcactgcctttctccaccctacgggggacacagagcttatagtatctgt 336

                                                                       
Query: 423 cctaggatcctaataggctgctaggagggaacacgggggtacctcctctctttgccctag 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 cctaggatcctaataggctgctaggagggaacacgggggtacctcctctctttgccctag 276

                                                                       
Query: 483 ctgacttctgctattctgttctcccagaagagggcattaccagcggtctcttggtgttgt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctgacttctgctattctgttctcccagaagagggcattaccagcggtctcttggtgttgt 216

                      
Query: 543 atctgtgggca 553
           |||||||||||
Sbjct: 215 atctgtgggca 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space:   512049
Effective search space used:   512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)