BAC Information

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BAC

Clone NameMSMg01-121E07
Chromosome11 (Build37)
Map Location 3,081,904 - 3,082,025
singlet/doubletsinglet
Overlap geneSfi1
Upstream geneLOC236604, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121E07.T7 (MSMg01no121_e07.b1)MSMg01-121E07.TJ (MSMg01no121_e07.g1)
ACCAG331423AG331424
length784770
length of high quality
(start - end)
157 (133 - 289)285 (125 - 409)
definitionCHROMAT_FILE: MSMg01no121_e07.b1 PHD_FILE: MSMg01no121_e07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:59 2005CHROMAT_FILE: MSMg01no121_e07.g1 PHD_FILE: MSMg01no121_e07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:28:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAACAACAAACAACAAACCACCCAAGACAAAAACAACCGAACACCCACAT
AACANAANACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATCATGTTTCCACTCACTATTTTATTCCCACTGT
TCTCTCTCTGGGCTCAGCTCCTGCTGTGCTTTCTTAGTCTCTATTGCCCG
GATTCTTCTTTGTCTCACAGACAGCCCTAGGCAGCCACATGCAGTGTGCT
GGCTGCAGTGTGCTGGCTGCAGTGTGCTGGATGCAGTGCGCTGGCTGCAG
TGTGCTGGCTGCAGTGTGCTGGCTGCAGTGTGCTGGATGCAGTGTGCTGG
ATGCAGTGTGCTGGCAGTGCGCAGTCTACTTTTTCTCCCTGCTCTGGGCT
TTCCAGATGCTTCTGGCTGTTCTCCCTCTCCTCCCCCACCCAACCTTCCC
ACACCATGAAGTGGGCGTGTTGGCAGTTTATACAGATATCCCATGATGAT
GGACTGTAACTTGTAAACCAAAAAACCCCTTTCCAAACCAAGTTAGCTTT
TGGTCAGTGTCCCATCACACTACAGAACCTACGCTATGACAGTATCTCTG
AATGAAGGCTTGAAGGTTTCTTCCTTTAATCCACCTCTTGTCTTTAAAGG
GAGAGAAAGTCAAGCCTGGCTTGAGGTAGGCAAATGTACTGTGAATTTTA
CTTCCTAATATGGTCTACTCTTATTTGTGGTTCTGGAACCCTTTTGATGT
GTGGTTTTAAAACCCCGTGCCCCTCCTGGCTCAT
AAAAAACAAAGAAAAAAAAAAAAAAAAAAGCAACGAACCCCCCAAAAAAA
AAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXTCAAAACAGGAGGTG
AACTATAGAAGTATCGCAAAATTCCGCAGTTGAATCCTTCTCAACAGTCT
GTGTTGTGGGAACACTTCATTACCACCATTCCCCAGCTGAAGAGTTCTGA
ATTCACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACGGGAACACTTAT
GACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATCTTCCTTGCGCCG
GTGATGGTAACCGTCCCAGGTTTTCTTGTCGCGGGTTATCTCGTCCCAGG
TCTTCTCGTCCCGGGTTTTTTTTTAAACTCTTACACGCATTCACGAAACT
GGCCAGGAATAATGCAACCCCCCCCACCTCTTCTGCGGCAAAAGCTTTAT
TGCTTACATCTTCTGGAGCCAGAGCAAGAGTGCAAGAGTGCAAGAAAAAG
AACAAGAACAAGAAAGCAAGAGAGAGCAAGAAAGCAAGAAAAAGAACAAG
AAAAAGAAAGCAAGAGAAAGAATGGCAAAACCCTGTCCCTTTTAAGGAGA
ATTATCCTCCGCCTAGGACGTATCACTCCCTGATTGGCTGCGGCCCATCG
GCCCAATTGTCATCATGGGAAAGGCAGAACACATGGCGGGAAAACTGCCC
CTGCACGTGTGCAGACTATGTTTACCACTTAGAACACGTCTGCCACGTTC
TTCTTATAAGGCAAATGTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_e07.b1 MSMg01no121_e07.b1 CHROMAT_FILE:
MSMg01no121_e07.b1 PHD_FILE: MSMg01no121_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:28:59 2005
         (157 letters)



>mm_chr11_3081704_3082260
          Length = 557

 Score =  205 bits (106), Expect = 1e-57
 Identities = 118/122 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctattttattcccactgttctctctctgggctcagctcctgctgtgctttcttagtctct 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 322 ctattttattcccactgttctctctctgggctcagctcctgctgtgctttcttattctct 263

                                                                       
Query: 61  attgcccggattcttctttgtctcacagacagccctaggcagccacatgcagtgtgctgg 120
           | |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct: 262 actgcccggattcttctttgtctcacagacagccctagccagccacatccagtgtgctgg 203

             
Query: 121 ct 122
           ||
Sbjct: 202 ct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)