BAC Information

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BAC

Clone NameMSMg01-121L18
Chromosome11 (Build37)
Map Location 106,873,550 - 106,873,736
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2
Downstream gene1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121L18.T7 (MSMg01no121_l18.b1)MSMg01-121L18.TJ (MSMg01no121_l18.g1)
ACCAG331772AG331773
length727734
length of high quality
(start - end)
187 (125 - 311)251 (70 - 320)
definitionCHROMAT_FILE: MSMg01no121_l18.b1 PHD_FILE: MSMg01no121_l18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:36 2005CHROMAT_FILE: MSMg01no121_l18.g1 PHD_FILE: MSMg01no121_l18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTACTTACGGGATGGAGGAATAAAACTCTGAAACTCTTACTTTT
AAAACCTACAATACGTGCCTTTTACACGCAGCAAACACATTTCATGACAC
CGGAAACCAGTCATCCGAGATCTAGCTATAGGGCGAAAAACTAAAAAGTA
TTATTTTGTATTTAGAGACTCTGTCTTCATTTCCCCTTTTAATCTAGGGG
GTAGGGAGAGGGCTGGGGAGACGGATGTTGGGAAAGAGGGCAGGTCAGAA
GTTTCCTTGGGCTGGAAGATTCTGTGAGTCCACAGCATATTAACAGGTAA
CCAAGTCTTTTTTTGTCTCCCCCCCCCCCCCGACTGGTAAGCCCAGGGAG
GTTAAGGTGGCTGATACAGAAAGAAAAAAGTACTTTGTCAAGTCGAATGG
ATTATGATGTCACAGCTTGAGCTGTTTATTGTTCCCCTGCGGACTCTAAC
GCGTGAATTTATTGAGCTCGCCCCTCTATAACCTCTCCGAAAATTTTGTA
ACCCCCGGTCCATCCTTTTATATCTATGTTGATCTTTGCCTGTGGCGCAT
TTTCCCCTCTCTATTCCGGCCTTTCTTTCCTTTCCCTTTCACCATTTGCC
ATCTCCTCTTTTTTTTTCTTTTCCCCTCCCACCGCCCCCCTTGCTTGTTT
TTTTCCTTGTTTCCCTCCTCTCCCCTG
ATGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCACGACAGCCAGGGTTATACAGAGAAACCCCG
TCTCGAAAAACCCAAAAAAAAAAAAAAAAAAAAAAAAGATATTAAAAAAA
AAAAAAAAAGACAGAAAGAAGACCGAAGGTGGAAGAGCTGCTGATACAGC
TTTGGTAACATACTAACCACAAAATCAACATCAGTCCCCGGAACTCAATC
CGGAGAAGCCAGTGGTGATACATGCAATATTCCCCATGCTGGGAGGCAGA
GACAAGTGGATCCCTGCAGTTTATTCGTCCAAGGCCAGGCAGCCTGTTGT
CCTAATCTGATTTGTATGCCACCCCGCCACCCTGTCTCAAAAATAAAGGT
AGAGTATCCTTAGAACTACCAAATAAAAAATAAAAGTAAAAGACCGCAGT
AGCACATAACATGATTCCTCTGCCCCATATGCACTTAGAAACACATATGA
GGGCTGGTGAGATGGTTCATTGCCCAAGAGCACCCCACTGTTCTTCCAAG
GTCCGGAGTCCCCATCCCACCCACCCCCTGGTCCCCCCCTTCATCCCCAA
CGAGCTCCGATTCCCTCTTCCGCACGCCTGAATACCCCTCCCCTCCCCTT
ACCAACACCCCCTCCCAACCCCCCTCACAAACAACAAACCCCCCCTCACA
CCCCCCTCTCCCCTCCGCTCCCACCCTCACCGCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_l18.b1 MSMg01no121_l18.b1 CHROMAT_FILE:
MSMg01no121_l18.b1 PHD_FILE: MSMg01no121_l18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:36 2005
         (187 letters)



>mm_chr11_106873350_106873936
          Length = 587

 Score =  346 bits (179), Expect = e-100
 Identities = 185/187 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacgcagcaaacacatttcatgacaccggaaaccagtcatccgagatctagctatagggc 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacgcagcaaacacatttcatgaaaccggaaaccagtcatccgagatctagctatagggc 260

                                                                       
Query: 61  gaaaaactaaaaagtattattttgtatttagagactctgtcttcatttccccttttaatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaaaaactaaaaagtattattttgtatttagagactctgtcttcatttccccttttaatc 320

                                                                       
Query: 121 tagggggtagggagagggctggggagacggatgttgggaaagagggcaggtcagaagttt 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taggggggagggagagggctggggagacggatgttgggaaagagggcaggtcagaagttt 380

                  
Query: 181 ccttggg 187
           |||||||
Sbjct: 381 ccttggg 387


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space:   103641
Effective search space used:   103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)