BAC Information

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BAC

Clone NameMSMg01-121M05
Chromosome11 (Build37)
Map Location 3,081,696 - 3,081,916
singlet/doubletsinglet
Overlap geneSfi1
Upstream geneLOC236604, LOC623257
Downstream geneEif4enif1, Drg1, Patz1, Pik3ip1, Limk2, Rnf185, 8430429K09Rik, LOC100041573, Pla2g3, Pib5pa, Selm, Smtn, Map1lc3-5, LOC625608, Tug1, Morc2a, LOC664900, Osbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-121M05.T7 (MSMg01no121_m05.b1)MSMg01-121M05.TJ (MSMg01no121_m05.g1)
ACCAG331793AG331794
length663677
length of high quality
(start - end)
441 (36 - 476)529 (54 - 582)
definitionCHROMAT_FILE: MSMg01no121_m05.b1 PHD_FILE: MSMg01no121_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:39 2005CHROMAT_FILE: MSMg01no121_m05.g1 PHD_FILE: MSMg01no121_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:29:39 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAAANAAGATCCGCGGAATTCATCATTTCACCCTCACTATTTTATTCCC
ACTGTTCTCTCTCTGGGCTCAGCTCCTGCTGTGCTTTCTTAGTCTCTATT
GCCCGGATTCTTCTTTGTCTCCAGACAGCCCTAGGCAGCCACATGCAGTG
TGCTGGCTGCAGTGTGCTGGCTGCAGTGTGCTGGATGCAGTGTGCTGGCT
GCAGTGTGCTGGCTGCAGTGTGCTGGCTGCAGCGTGCTGGATGCAGTGTG
CTGGATGCAGTGTGCTGGCAGTGTGCAGTCTACTTTCTCTCCCTGCTCTG
GGCTTTCCAGATGCTTCTGGCTGCTCTCCCTCTCCTCTACAATAAAACCT
TCCCACACCATGGAGTGGGCGTGTTGGCAGTTTATACAGATATCCCATGA
TGATGGACTGTAACCTGGAAGCCAAAAAACCCCTTTCCAAACCAAGTTAG
TTTTGGTCAGTGTCCCATCACACGACAGATCCTAGGCTAGGACAGTATCT
CTGAAGGAAGGCTTGAAGGCTTCTTCCTTTAGTCGACCTCTTTTCTTTAA
AGGATAGAAGTCCAAGTCTGGCCACAGGCCAGGAAAGTGCACTGTGGGTT
TTTACTTTCCAATATGACTACTCCGATTTTGGGGGCCTGGCAAGCTTTGA
TGCGTGTTCCAAA
GGCGGCCGCCTTTTCAAAAATGGAGGTGACCTATAGATTGTCCACGAAAT
TCCGCAGTTGAATCCTTCTCAACAGTCTGTGTTGTGGGAACACTTCATTA
CCACCATTCCCCAGCTGAAGAGTTCTGAATTCACGCAGTTGAATCCTTCT
CAACAGTCTGTTTTACGGGAACACTTATGACCGTGACCCGCAGTTCTGGT
TCCGGAATGAGGGATCTTCCTTGCGCCGGTGATGGTAACCGTCCCAGGTT
TTCTTGTCGCGGGTTATCTCGTCCCAGGTCTTCTCGTCCCGGGTTTCTTT
TTCAAACTCTTACACGCATTCACGAAACTGGCCAGGAAGAATGCAACAAA
CCGGAATCTTCTGCGGCAAAAGCTTTATTGCTTACATCTTCAGGAGCCAG
AGCAAGAGTGCAAGAGTGCAAGAAAAAGAACAAGAACAAGAAAGCAAGAG
AGAGCAAGAAAGCAAGAAAAAGAACAAGAAAAAGAAAGCAAGAGAAAGAA
TGGCAAAACCCTGTCCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTA
TTACTCCCTGATTGGCTGCAGCCCATCGGCCCAATTGTCATCATGCGAAA
GGCAGAACACATGGCGGGAAAACTGCCCCTGCACGTGTGCAGACTATGTT
TACCATTTAGAACACAGCTGTCAGCGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no121_m05.b1 MSMg01no121_m05.b1 CHROMAT_FILE:
MSMg01no121_m05.b1 PHD_FILE: MSMg01no121_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:29:39 2005
         (441 letters)



>mm_chr11_3081344_3082186
          Length = 843

 Score =  356 bits (184), Expect = e-102
 Identities = 212/222 (95%), Gaps = 4/222 (1%)
 Strand = Plus / Minus

                                                                       
Query: 223 cagtgtgctggc-agtgtgcagtctactttctctccctgctctgggctttccagatgctt 281
           |||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 573 cagtgtgctggcta-tgtgcagtctactttctctccctgctctggactttccagatgctt 515

                                                                       
Query: 282 ctggctgctctccctctcc--tctacaataaaaccttcccacaccatggagtgggcgtgt 339
           ||||||| |||||||||||  ||||||||||||| ||||||||||||||||||| || ||
Sbjct: 514 ctggctgttctccctctcctatctacaataaaactttcccacaccatggagtggtcgcgt 455

                                                                       
Query: 340 tggcagtttatacagatatcccatgatgatggactgtaacctggaagccaaaaaacccct 399
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 454 tggcagtttatacagatatcccatgatgatggactgtaacctagaagccaaaaaacccct 395

                                                     
Query: 400 ttccaaaccaagttagttttggtcagtgtcccatcacacgac 441
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 ttccaaaccaagttagttttggtcagtgtcccatcacacgac 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 441
Length of database: 843
Length adjustment: 9
Effective length of query: 432
Effective length of database: 834
Effective search space:   360288
Effective search space used:   360288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)