BAC Information

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BAC

Clone NameMSMg01-122E06
Chromosome11 (Build37)
Map Location 100,771,515 - 100,772,229
singlet/doubletsinglet
Overlap geneStat3
Upstream geneLOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a
Downstream genePtrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1, Tubg2, Plekhh3, Ccr10, Cntnap1, Ezh1, Ramp2, Vps25, Wnk4, Ccdc56, Cntd1, Becn1, Psme3, Aoc2, Aoc3, LOC629949, G6pc, Aarsd1, 1700113I22Rik, Rundc1, Rpl27, Ifi35, Vat1, Rnd2, Brca1, Nbr1, Tmem106a, LOC667306, Rdm1, Arl4d, LOC100038842, Dhx8, Etv4, Meox1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122E06.T7 (MSMg01no122_e06.b1)MSMg01-122E06.TJ (MSMg01no122_e06.g1)
ACCAG332171AG332172
length1,0742,164
length of high quality
(start - end)		814 (50 - 863)---
definitionCHROMAT_FILE: MSMg01no122_e06.b1 PHD_FILE: MSMg01no122_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:32 2005CHROMAT_FILE: MSMg01no122_e06.g1 PHD_FILE: MSMg01no122_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:30:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAGTTTTTNNNNGGCAGTGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTATGTCAGGTAGAAACTGGGGTCTACCACACACGTGGCTTC
CCCTGGTAAAGAGGAGGCATGGGATGAGGAGGGAACTAGAGGCATAGAGG
AAATGCCAGCTGTTTACCTCACTTTAGTGTATTCAGGCCCGTGTGCTAGT
TCTGGCCTAAGTCAGCCCTATCTGCGTGTGACCTACTTTTTCCAGAAGAC
ATACCTGATTTAGTGATGGGCCAAAGAGGTGTGGATCACACCTCAGCCTG
GCATTGCTCATTAAGCTAAGAAGCACTTATAGACACTAGTCTGACTGAAC
ACAGGGTTGGCCAAGAATTTAAGGCAAACAACCTTATCTGTCCTTTTTTA
AAAAAAAAAACCAAAACATTTACCAGTATGTGTGCACGTTTGTATAGATT
CAGGCGTGTGTGCATTCGTGTATGTGTGTAGGCCAGAAGACAACCTCAAG
TGTCATTCTTAAGAACGCCTTTTGGGTTCGTTGAGACTGAGTCATTCATT
GGTCCAGAGTTAACCAATTAGGGCAGACCCTCAGGATCTATCTCTGTCTG
ATGCCCAGCGCTGGGCTTACACGCATGTGCTACTGTGCCCAGCATTTTCT
TTTTTTAATTGAAAATAGATTTTTAGTATTTCTGGCTATGTTTTCTCTTC
CCCCATCTCCTCTAAGATCTTCCCTAACTCCCCTCCTACCCAAATCCACA
CCCTTTCTCTCTCTCTCACTAGAACACAAACAGGCACTAAGAAACAGTAA
TAAGATAAGGCAAACAAACTGGAATAAGGTGAAATAAACCAACAGAAAAA
AAAAGAGCCAAAGAGAAAGTATAAGAATGATAATATATTTGCCAGCATTT
TTATGTGAGTTCTGTGGATGGGAGCTCAGGTCCTCATCGCTCTCACGGTT
GAACCAACTGCCCAGACTGCATCTGGTCCTTTCATTGTCATCCGTGTTGT
TGTTTGGTTAATGTTGTGTGGAATTTGGGGGTTGGGGCCCACCTTCTGTA
ATTTCCCTTCCCTTCTGGTCCTTT

ACTTCTTTTATTTGAGGGGGAGGGCCCCCCGNANNNNNNNNNNNNNNNCN
CNNNNACNNGNCTACGGGGGGGGGGNGNNNACCCTCCTCTATATAGAAGA
GGGCTCTCCCCTCCTNNNNNANNGTTAGCCCCCCGCCTAATGTGTAATAC
ATACTAAAGTGAGGATGTAGTACGAGGTGATGATAGTGTATCTCGTGAAA
GTACGATGAATTGAATTAGTTGTTCTACAATAGTTCGCGCTCCAAGGTTA
TGTGATATTGATTCGCTCATGTGTGTGAAAGATCTAATAAGGAATATGTA
GATTGATAGATGATACACGTGTGGAGTGGGAGGAAGAATACTAATGCTAT
AGATTGATTATGGAAGTGGTGTGTATAGAGTATGCATAGTGAATAATATG
TTAGGATGTATGTGAGTATATATTAAGTGTTAGAGAGATAAAAGTGTATG
AAATAATGTATGCAAATTTGTAGACTAGTGGTGACTATCAAGACTTGTGA
GTGGAGATATAAATACCTAGAAATAATAGTGAATAAAGTTAGTGTAGCGA
TATAATATAGCATATATATGTAGCTGATGTAACTGACCATGTGATATAAT
TAGATTCATGTAATGCACTGTAATGAATATGTATTATAGAACAATGTAAA
GAGTCGGGATGTGGTATCAATGGATTTTTTTTTATTTTATTTATATGATA
TTGGCTATAGAGCGCATAATCAATGATTGAATAATATATTTGCGAAGTGG
GGAAAGAAGTGAGTATATGGCACCCCGCGCTCTATTGATTATTTTGCTCG
TCCACCGCTGACCTAAAAAATTATGATGAGGTGCAATGGGGTGTTCATAT
TCGCGTATAAAATAAATAGATAAGAGGGTGTGAGAATTCATTAAAGTTGA
TAAGTAATCGAGTTAATTGTATTTACGTGATGTATAATAAGTGAAGCATT
ATGTCAGTAGAATAGAAGTATGTAATGTGTTATTACTATGCGATGGATCT
AACGAAGAATAATATGAATAGAAGAGATATGTGATCTTAGGCATTAATGT
GAATGATTCTTTAGGTGACTATGTGTCTGTCTGTTATGTAAGGTATTAAT
TGAAAATAAGTTATTAGAGTTCTTCATACAGAGGTGCGCTACTCACATCT
GGCAAGATATTGGTCTATGCTATGACGTGGTGTGTGATCGAGTAGTGATT
GGAACATTATTCTGTTGGATACATTTAGACTAGAAAGTATAGTATTTGTA
ATAAGGGACGTTGGTTAGTGAGCCTTCATGTCATAACTAATATTCGGTAC
ATGAGTATAAATTAATATTACAGGTAGTTCATTGCGCTATGGCACTTGAT
AAATTATAACATCAGGTGATGACTGTGGATTATAGATGTAATGGATTAAA
AGCTATTAAGATATATAAGTTGATATATTCGCATGATTAATAAAGTGGAT
CTATGATAGTTTAATTGCTAATGCATAGTGAGAATAGTGTAGAATTGTCT
GAGAATGTGATCATCCATTGCAGGAATTATGCGAATATAAATGTAATTGT
GAGAGTTATATGAATATGATGAAGATTAAGTATGCAGTTCATGTGTATAG
TGGAATGTTAATAGCGAGGATATTACTGATGCATTAAGCTATTCAATTAA
AGTAAACAGGATTGCTCAAATCGATAGTGATTGATGTGATATCAATGTGA
CTGTTGATGACTGAATATGAAGTGTAATATGTAAGTAGAGTAAGCAATAG
TGTCGATGTATAATCTAGAATGTATATATCATTAGCTATATGTCTACATA
TGTGCATGAATAGAGTATAGATAATAACAATACTGTAGTAGTATGTATAT
GTTGTCACTACAGACGTGACGTAGCAGTATATTTGAGTGAATGTAAACTT
TGTATATATCATAGNAGGNCGATGAATATGCTGTACTCTGTGATATCTAA
CTTTGAGATGTACAGNCATGTTTCATCTATGTATGCTATGTGTGAGAGTA
CGGTGAGTAAATGATATAGAGTAGATATTGATGTAAGTGAGATATAATAC
TGGAGACACGATACGGCATCATGACAATAGCGACTGATCAGATGAGTCTG
TGTACATGCATGATATCGCTCTATGAATCAGATGAGGATACACGATACAT
ATCGTGGATGTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_e06.b1 MSMg01no122_e06.b1 CHROMAT_FILE:
MSMg01no122_e06.b1 PHD_FILE: MSMg01no122_e06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:30:32 2005
         (814 letters)



>mm_chr11_100771509_100772720
          Length = 1212

 Score = 1265 bits (654), Expect = 0.0
 Identities = 700/722 (96%), Gaps = 15/722 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatgtcaggtagaaactggggtctaccacacacgtggcttcccctggtaaagag 64
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gaattctatgtcaggtagaaattggggtctaccacacacgtggcttcccctggtaaagag 662

                                                                       
Query: 65  gaggcatgggatgaggagggaactagaggcatagaggaaatgccagctgtttacctcact 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaggcatgggatgaggagggaactagaggcatagaggaaatgccagctgtttacctcact 602

                                                                       
Query: 125 ttagtgtattcaggcccgtgtgctagttctggcctaagtcagccctatctgcgtgtgacc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 ttagtgtattcaggcccgtgtgctagttctggcctaagtcagccctatctgcgtgtgacc 542

                                                                       
Query: 185 tactttttccagaagacatacctgatttagtgatgggccaaagaggtgtggatcacacct 244
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 541 tactttttccagaagacatacctgatttggtgatgggccaaagaggtgtggatcacacct 482

                                                                       
Query: 245 cagcctggcattgctcattaagctaagaagcacttatagacactagtctgactgaacaca 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 481 cagcctggcattgctcattaagctaagaagcacttatagacactagtctgactgaataca 422

                                                                       
Query: 305 gggttggccaagaatttaaggcaaacaaccttatctgtccttttttaaaaaaa-aaaacc 363
           ||||||||||||||||||||||||||||||||||||||||   |||||||||| |||| |
Sbjct: 421 gggttggccaagaatttaaggcaaacaaccttatctgtcc---tttaaaaaaacaaaaac 365

                                                                       
Query: 364 aaaacatttaccagtatgtgtgcacgtttgtatagattcaggcgtgtgtgcattcgtgta 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaaacatttaccagtatgtgtgcacgtttgtatagattcaggcgtgtgtgcattcgtgta 305

                                                                       
Query: 424 tgtgtgtaggccagaagacaacctcaagtgtcattcttaagaacgccttttgggttcgtt 483
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tgcgtgtaggccagaagacaacctcaagtgtcattcttaagaacgccttttgggttcgtt 245

                                                                       
Query: 484 gagactgagtcattcattggtccagagttaaccaattagggcagaccctcaggatctatc 543
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 244 gagactgagtcattcattggtccagagttaaccaattagggcagaccttcaggatctatc 185

                                                                       
Query: 544 tctgtctgatgcccagcgctgggcttacacgcatgtgctactgtgcccagcattttcttt 603
               ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ----tctgatgcccagcgctgggcttacacgcatgtgctactgtgcccagcattttcttt 129

                                                                       
Query: 604 ttttaattgaaaatagattttt----ag---tatttctggctatgttttctcttccccca 656
           |||||||| |||||||||||||    ||   |||||||||||||||||||||||||||||
Sbjct: 128 ttttaatttaaaatagatttttttaaagatatatttctggctatgttttctcttccccca 69

                                                                       
Query: 657 tctcctctaagatcttccctaactcccctcctacccaaatccacaccctttctctctctc 716
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  tctcctctaagatcttccctaactcccctcctacccaaatccacaccctttctctctctc 9

             
Query: 717 tc 718
           ||
Sbjct: 8   tc 7


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 814
Length of database: 1212
Length adjustment: 10
Effective length of query: 804
Effective length of database: 1202
Effective search space:   966408
Effective search space used:   966408
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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