BAC Information

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BAC

Clone NameMSMg01-122J02
Chromosome11 (Build37)
Map Location 19,755,461 - 19,756,113
singlet/doubletsinglet
Overlap geneLOC665868
Upstream geneMeis1, LOC635455, LOC100042708, Glns-ps1
Downstream geneLOC100041937, Spred2, Actr2, Rab1, Cep68, LOC216544, Slc1a4, LOC100042746, LOC382492, Sertad2, LOC665953, Aftph, 1110067D22Rik, LOC100042035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-122J02.T7 (MSMg01no122_j02.b1)MSMg01-122J02.TJ (MSMg01no122_j02.g1)
ACCAG332392AG332393
length1,1821,158
length of high quality
(start - end)
630 (86 - 715)653 (82 - 734)
definitionCHROMAT_FILE: MSMg01no122_j02.b1 PHD_FILE: MSMg01no122_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:09 2005CHROMAT_FILE: MSMg01no122_j02.g1 PHD_FILE: MSMg01no122_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:31:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCGGTAAATGNNNNAACCACTGCGGCGCTATAGACTCCTAAGGGAGAGGA
TCCGCGGAATTCCAGATAGGACCCTGTGCAGTTAATCCGAATGGGAGATC
ATCTTTGGATAGCCCGTTTTATCTTGCATCAGGTATGCGAAGACTTTGGG
GTGATAGCAACCCCAAGCCCATTCCAGGGAACTGGAATGATGCAGGCTGC
CATACCAACTTCAGCACCAAGGCCATGCGGGAGGAGAATGGTCTGAAGTG
CATTGAGGAAGCCATTGACAAACTGAGCAAGAGGCACCAGTACCACATCC
GCACCTACGATCCCAAGGGGGGCCTGGACAACTCCCGGCATCTGACTGGA
TTCCACGAAACCTCCAACATCAACGACTTTTCTGCCGGTGTTGCCAACCG
CAGTGCCAGTATCCGCATTCCCCAGACTGTCGGCCAGGAGAAGAAGGGCT
ACTTTGAAGACCGTCGGCCTTCTGCCAATTGTGACCCCTATGCGGAGACA
GAAGCCATCGTCCGCACGTGTCTCCTCAACGAAACAGGCGACGAATCCTT
CCAATACAAGAACTAAGCAGACTAGACTTCCAGTGATCCCTCTCCCAGCT
CTTCCCTCTCCCAGTTGTCCCCACTGTAACTCAAAGGATGGAATACCAAG
GTCTTTTTATTCCTCGTGCCAAAAAAAAGAAAACAGAAACTTTTAACTTA
CTGTGAATCTAATCATATTCATTTTTTTCCATTTTTATATTATCCATGAA
CAACTTTTAGTGATCTTTGTCTACTACATTTATTATGTTTTTGATTACCA
TATTATTCTAAAAACCGCCCCATTCCCTTTTTTTATTTCATTATTATGTT
CCATACAGGAACTAGTGTTTAGACTCTGTTCCCAAACCTCCCAGCTAAGG
TATTATTTATGTTGACACCCCTGTCCATAATATAATTATGAACGTTTTCC
CTGATTCTGCCCCCTAAACCTTTGACTGTAATAAAATCTTAAAGATTTGT
TTGGTAACCCTCATTTTTTGAATCCTCCCCAAACTGGCTATAACCTTATG
GGGCCCCAATAAATATGGGCATTCTCAGGCTTTTATATCCTTTATTTGGA
GATTGTGGGGTTAAACTTTTAATAATGGTTTAAACCAACATCACACCCTG
TTAGTTATAAACATCCTTTTCCCTCTGGCCTC
CTTTTTTTAAGAATGGAGGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTTTTATGGCATCTTGACTGCAATAAGTCA
ATACGTTTGTACTCTGTCTTGTTACTGAGCAATACTGGAAATAGGGAAAG
CAGAGTACTTGTGCAGAGAGAGTATCTATTTCCCCTTTGTGACTTTTGTA
TTTTGGGAGTGAAATGGCCTAGGGAGACAGTAAATTTGTTCTATAGACCA
CAGAGATCTTAAACTTATGATCCCACTGCCTCAACCTCTCAAGTAGATGG
AGATTACAGGAGTGTACCATCAAGTCTGGCCTCTTCTGTTTTTATGTAGA
AATAGATGTTTTACCGAAGCACAGTGCCACCCCGCTAAATCTCCTGTAAG
ACCAACCTGCCTTGCGGCTAGGAATAGCTTCTGGCTAACAGGATGGTAGG
TATGGTGTGTGTGTCCTCCAAAACATACCTTTGAAGGGGGCACTACACAT
TCTGAACTTCTCCACCTTTACCCTATGGCAAGGACAGATTTGGGCCTTAT
TATAGACATCTTAGACTGGGCACAGACCTAAGAACTGTTGCTCTGAATTT
TAATTGGGCCCCCAAGAGCTGGTTGTCCACATGTAGACCCAAATGACACT
ATGCGACCTTGTCCCCAAGTTATTTCTGATTGGTGAATAAAGTTGCCTAT
ACCCTATAGTTGGGCAGAATTGAGATAGGCAGGGCTTGGAGTTCCCGGCC
TCGGGGTCAGAGGAGACCAGGAGGAGAGAGAGGAGAAAGAGGCCATGATT
AGGCCAACAAAGCATGGCCCCAAGGACTGGCCAATTGGAGGTAAAAGCAG
CCCAGATAAGACGTAGTAAGTAATTACTCGGGGTTATCACAGCGAAGTGT
GTTTCTTGTTGCGACTGCCTCCCGACCAATAAGAACGACACATCCTCCAG
TTCCTTTTTAAAAACATTTTATTCCGCAAAACTTCCGTCCTTCATCCCTC
CTTGTCACCTCCCCCAGGTACGGCAGCTTTCGCCCAATCATGGTGGGCAA
GCGAATTAGGTTCCCCCCCCAATTTGGGCTTCTTGTTTTAAACCCCCCCC
CCCATTCGTTGTGTCCACCTGGCTCTAATTTTTTCCTAATGGTTCTCCGG
GGCTTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no122_j02.g1 MSMg01no122_j02.g1 CHROMAT_FILE:
MSMg01no122_j02.g1 PHD_FILE: MSMg01no122_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:31:10 2005
         (653 letters)



>mm_chr11_19755162_19756214
          Length = 1053

 Score = 1147 bits (593), Expect = 0.0
 Identities = 638/653 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgactgcaataagtcaatacgtttgtactctgtcttgttactgagcaatactggaaa 60
           |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 952 tcttgactgcaataagtcaatacgtttgtagtcagtcttgttactgagcaatactggaaa 893

                                                                       
Query: 61  tagggaaagcagagtacttgtgcagagagagtatctatttcccctttgtgacttttgtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tagggaaagcagagtacttgtgcagagagagtatctatttcccctttgtgacttttgtat 833

                                                                       
Query: 121 tttgggagtgaaatggcctagggagacagtaaatttgttctatagaccacagagatctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tttgggagtgaaatggcctagggagacagtaaatttgttctatagaccacagagatctta 773

                                                                       
Query: 181 aacttatgatcccactgcctcaacctctcaagtagatggagattacaggagtgtaccatc 240
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 772 aacttatgatcccactgcctcaacctctcaagtagctggagattacaggagtgtaccatc 713

                                                                       
Query: 241 aagtctggcctcttctgtttttatgtagaaatagatgttttaccgaagcacagtgccacc 300
           |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 712 aagtctggcctcttctgtttttatgtagaaatagattttttaccgaagcacaatgccacc 653

                                                                       
Query: 301 ccgctaaatctcctgtaagaccaacctgccttgcggctaggaatagcttctggctaacag 360
           |||||||||||||| |||| ||||||||||||| |||||| ||||||||||||| |||||
Sbjct: 652 ccgctaaatctcctataaggccaacctgccttgtggctagaaatagcttctggccaacag 593

                                                                       
Query: 361 gatggtaggtatggtgtgtgtgtcctccaaaacatacctttgaagggggcactacacatt 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gatggtagatatggtgtgtgtgtcctccaaaacatacctttgaagggggcactacacatt 533

                                                                       
Query: 421 ctgaacttctccacctttaccctatggcaaggacagatttgggccttattatagacatct 480
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 532 ctgaacttctccacctttaccctatggcaaggacagatttgggccttattatagacgtct 473

                                                                       
Query: 481 tagactgggcacagacctaagaactgttgctctgaattttaattgggcccccaagagctg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 tagactgggcacagacctaagaactgttgctctgaattttaattgggcccccaagagctg 413

                                                                       
Query: 541 gttgtccacatgtagacccaaatgacactatgcgaccttgtccccaagttatttctgatt 600
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 412 gttgtccacatgtagacccaaatgacactatgtgaccttgtccccaagttatttctgatt 353

                                                                
Query: 601 ggtgaataaagttgcctataccctatagttgggcagaattgagataggcaggg 653
           ||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 352 ggtgaataaagatgcttataccctatagttgggcagaattgagataggcaggg 300


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space:   670649
Effective search space used:   670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)