BAC Information

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BAC

Clone NameMSMg01-124A10
Chromosome11 (Build37)
Map Location 90,111,551 - 90,111,865
singlet/doubletsinglet
Overlap geneMmd
Upstream geneNog, LOC100039047, 4932411E22Rik, Ankfn1, Pctp, Tmem100, LOC100039104
Downstream geneHlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124A10.T7 (MSMg01no124_a10.b1)MSMg01-124A10.TJ (MSMg01no124_a10.g1)
ACCAG333484AG333485
length1,2341,273
length of high quality
(start - end)
354 (44 - 397)317 (138 - 454)
definitionCHROMAT_FILE: MSMg01no124_a10.b1 PHD_FILE: MSMg01no124_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:33 2005CHROMAT_FILE: MSMg01no124_a10.g1 PHD_FILE: MSMg01no124_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNCCTACTATCGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTC
TGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTA
TCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTT
TGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTA
GGTCCCATTTGTCAATTCTCGATCTTACAGAGCAAGCCATTGCTGTTCTG
TTCAGGAATTTTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTT
CTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCC
ATTTAGATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATT
TTTTTTCCTGCCCCCCCACCAGTTGTGCCCGCACCAATTGAAGAAAATGC
TGTCTTTCTTCCACTCGGATGGTTTTAGCTCCCTTGTCGAAGATCATGTG
ACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTCCCATGCAGTTTTTATCACAATTGCC
CTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCCAGAGGTTCTTT
TATCCTTGAGAAGAGCTTTTGCTATCCTAGGTTTTTTGCTATTCCAGATG
AATTTCCAAATTGCTCCCTCTAATTCGTTGAAGAATTGAGTTGTAATTTT
GATGGCGATTGCATTGAATCTGTAGATTGCTTTTGGCCTGATGGTCTTTT
TTACAATGTTGATCCTGCCAATCTCTGAGCCTGGGGAAATCCTTCCTCCT
CCTGAGATCCTTCTTTAATTCCTTTCTTCAAAGACTTGCTATTTTTTCAT
CTTAATCATCTTTTTACTTCCTTAACTTAGAGCTCAGCCCCAATTTTCTT
TTTTTTATCTTGTGCTTATTGGAAAACGCTGGTGTTTTTCCCCTACTTTC
TTTCTTAACCCCGTTTTATTCTTCTTTGTAAAGTAAATTCCTTTTGCTTT
TGGTCTCATTCTATTTTTAATTCCCGCTTTCTTTCCCTACAACCTGTTTT
TCTTCCTTCTTAGCGATCCTTCCCTGGGTCTATTTTTTTGTGCTCTCTTT
TACTATTACTTATCCCATTATCTCTCTCTAAAAA
TTTNNGTCTCAAGTGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXCCTTTAAGGTAATCACACTAGGCTACCCTGTTG
GTGGTGCCCTTTAGAGAATGGGTATGGNTGGNAGGNTCAGACAAAGGGAT
GGAGTTACCAGAAACCCCATGGGTGAACTTTCCCCCACTTAGAAACATTA
AAGCCCAGAGCTTTCTTTGGGAACAATAGGTCGGCAGCCTTCATCATTCC
TTCCACGCAGGTAATCCACCCGGGAGAGAAGGGCCACACCATGTCCCTCA
AGTCGGGCTATCCTACCACCTCTTTAGTGTAGAGAGACAACCCGCCTTCC
GGTGGCGCCTCCTCCGTTCTTTCTCCCTATTTCTTAAAACCAGGTTTCTC
ATAGGCATGTCTCTCCACCTGAATGCTAACTTGCCCCTGCCAAAAAAAAA
TTTTTTTTCCCCCCCCCAAATAGCACACCATTAGGTTCTAAAACAGAGAC
ACCCCCCGCCTCCGGACACCATCAGGAAAGCTGGACCCAGAGAAGCGTGC
CTCAGTTTCCCTGTCTCTAGGGCCAACCACCGACAAAACACCTCAAAAAG
CTCAGGCCAGACCTCCTACCCGCTGTAAGACAAACCTCGCCACAGGGTGC
TGCAGCAGCCTTAAGAGACCTCACGTTGGGGTTTGTCATAAGGTTGGAGG
CCCTGAGTGGAGTCGTGTGGAGGGCGCTCTGAGGCTGGATTAGTCTGCTA
GAAGCTAGCAACAGCGGTGCCTGGATGGGGATCTCAAGGGCCAAGCTAGT
TTTGCAAGCGTATGGAGGAAGCAAAGCAGATGCGTGTCCCCGGTCCACAG
TACCCTAACTGCCTGAAATGAAGGGAATCCCAGGATTGCTAGTCTTCCCG
GGACTCCGGCTCTTGTCCGGTGTTCGTTATTCCCCGGGTACGAAATCTGC
TCCCCGTCAAAATTCTTACCGCTGGTAATCCATCCCTGATCCGTCTTTTG
ATCTCCCGCCCCTCCGCGGGGTCCTCGGAAATTCCCTTTTTTTCTTGTTC
CGTCTGTTATTGTCGCTCCTCATCTTCAGGGTCTTTGAAATCTCCCTCCT
AAGACCCTCCGCATTGTTCCATTCTGTGAACTCATCTCAATCTGGTTTCC
GTTCTTCTATATTATCCCCCCCCTGTTGAGCTTCGTANTTTTATACCCTC
TCTGCTCATATCTTCTACTTCATTCTTTGCTATTATTATCTATTTCTTTA
TCTACTCGTCTCTCTTTCTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_a10.g1 MSMg01no124_a10.g1 CHROMAT_FILE:
MSMg01no124_a10.g1 PHD_FILE: MSMg01no124_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:33 2005
         (317 letters)



>mm_chr11_90111351_90112068
          Length = 718

 Score =  563 bits (291), Expect = e-165
 Identities = 309/315 (98%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagacaaagggatggagttaccagaaaccccatgggtgaactttcccccacttagaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 515 cagacaaagggatggagttaccagaaaccccatgggtgaactttcacccacttagaaaca 456

                                                                       
Query: 61  ttaaagcccagagctttctttgggaacaataggtcggcagccttcatcattccttccacg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttaaagcccagagctttctttgggaacaataggtcggcagccttcatcattccttccacg 396

                                                                       
Query: 121 caggtaatccacccgggagagaagggccacaccatgtccctcaagtcgggctatcctacc 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct: 395 caggtaatccacccgggagagaagggccacactatgtccctcaagtcgggctaccctacc 336

                                                                       
Query: 181 acctctttagtgtagag-agacaacccgccttccggtggcgcctcctccgttctttctcc 239
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 acctctttagtgtagagcagacaacccgccttccggtggcgcctcctccgttctttctcc 276

                                                                       
Query: 240 ctatttcttaaaaccaggtttctcataggcatgtctctccacctgaatgctaacttgccc 299
           ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 275 ctatttcctaaaaccaggtttctcaaaggcatgtctctccacctgaatgctaacttgccc 216

                          
Query: 300 ctgccaaaaaaaaat 314
           |||||||||||||||
Sbjct: 215 ctgccaaaaaaaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 718
Length adjustment: 9
Effective length of query: 308
Effective length of database: 709
Effective search space:   218372
Effective search space used:   218372
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)