BAC Information

Click to search

BAC

Clone NameMSMg01-124C15
Chromosome11 (Build37)
Map Location 34,576,400 - 34,576,890
singlet/doubletsinglet
Overlap geneDock2
Upstream geneKcnip1, Kcnmb1, Lcp2, Foxi1, Dock2, EG574403
Downstream geneCcdc99, LOC100038976, Slit3, LOC100039006
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124C15.T7 (MSMg01no124_c15.b1)MSMg01-124C15.TJ (MSMg01no124_c15.g1)
ACCAG333587AG333588
length1,2621,256
length of high quality
(start - end)
471 (122 - 592)491 (128 - 618)
definitionCHROMAT_FILE: MSMg01no124_c15.b1 PHD_FILE: MSMg01no124_c15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:53 2005CHROMAT_FILE: MSMg01no124_c15.g1 PHD_FILE: MSMg01no124_c15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:34:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTATTATATTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTTAATTTCCTTCTTGCCCTTTAAGCTCCCATAGCTCTTAGTCAGTA
GTGTGTTGTTCTTGTTTCTGTGAATTTGTGTGTTTTATGAAGTTTGTATT
GTTGTTAATAGCCATCTTTATTCTATTATAGTCAGATAAAATGCAGGAGG
TTATTTCAATTCTATATTTGGGGAGACTTGTTTTTTAATGTTCTAAGATG
TGATCTGTTTTGAAGACAGTTCCATGGGCTGCTGAGAACAATGTACAGTT
TTCAAAGTTTGGGAGGAATGTTCTGTAGATATCTGTTAGGTGCATTGAAT
TTATGATTTCATTTAGCTGCAGAGTTTCACTGTTTAGGTTTTTCCTCTCA
TATGACCAGAGGCAAGACTCAGGTAATGAAGTCATCCATTACCACTGTGT
TGTGGTTAATCTTTGGTTTTAGATCTAATAGTATTTCTTTCATGTAATTT
GGTTCCTCCTGTGTTTGGTGCATACATTTGTACAACTGCACAGTTCATGT
TTCTTTCATGGGTAGGAAGTACCTCTCCTTACCGTTTCTGACTAGTTTTG
GCTTGAAGTCTATTTTGCTGGGTATTAGAATGGTTGCATCTGCTCAGTTT
CTCAGTTACATTTGCTTGGAATACCTTTTTCCATCCTGTTACCCTACAGT
GTCATCCATCCTTGACTGTAAAGTGTGTTTCTGGCTACTCGCTCAAAGAT
GGATCCTGTTTCCTCATCTAATTTGTTAATCTGTGTCTGTTTCCTGTGAC
ATGAGACTATTAATATTTAGAATTATTATTCCATGGTGTTTATTAATGCC
TTTTGTTGCTTTCTTTGATTCCTTTACATTAAGTTATGCCAATTTTTCCC
TCTTGTACTGTAATTTAACCCTTCTCTTTACTTATTACTATTCTCTTCCC
GTCATTCTCCCGTTTTTCCTTAATACTTCTTTAATTTTTCTTAAATTCCC
TTTTTCATTTATGGTAAACCTCTTCTTTTTTTCCTTTTGAATTCTCTTGA
ACTATTTTTTGCTGTGCATAATCCATTCCTGGGCTCTTCTCCTATACCTG
TCATCGCTATATATAAAAAGCCCTTTTCTGGGTTCTTTCTAAACTCTCCT
TTGGCAATATATCCCTCCTTTATTCTTGCATCTACCCTGGATCTTCCTAT
TTGGCACCGTGATCTTCTTTCCCCCTGTATACTTCTTTCTATATAAACTT
CTATTCTTCCTG
TTTTCTTTCCCTATGGAGGCTGGGGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCCCTTATAAAGGACAGGGATTATAAGCAG
ACAGTCCTCTAGCTCCTGTCCCTTACAGTGAATGCAATCAGAAATGAAAG
TTTCACAAGGGAAGGGTCTTTCAACACTTGAACACCCAACAATGCAGTGG
CCTAGATAAAAGGGATGTAGTCCTTGAAAGAAACTACCAAGCTTGACTCA
TGAGAAAACATAAGTTCAGCTATCAACCCACCACCACCACCAAAGAGCCA
GTGGAGATAGCTCAGTTAGTAAAGTGCTTAAGAAGCCAACATGAGGACTT
AGGCTTGCATCTCTAGCATCCATGTAAAAGAGCTAAGCATGGTACTATGC
ATCTGTAATCTCACTGGAGGACGTAGAGACAGACAGATCCCTGAGTTCAT
TAGCCAGCCAGGCGAACTCACTCAATGAACTCCAGATTCAGAGAGAGGAT
CTGTCTCCAAACAAGAAAGGTGAAGAACAATTGCAGAAGACATCTGATCT
TTGGCCGCCCCACAGACACACAAACAAATGTGTGTACAAAACCCCACACT
AATATGTACATAGAATACACACAGAGACAGGTGTGCACCCACACTTCAAA
GGAGAAAGCACAACGTCATGTTACTTCAATATGAATTCTATAAGATAGAA
CAAATCAATGGCTATTCTTTTTAAACTCCCCCACAAAAGAACGGAGAAAA
ATACTTCACAAGATATTATGGCTAGTCTTGGTGTAATACAAGGAATTTAT
AATCAAAGACTGTATCTCTTGCGAATCTAGATTCATGCTTCTCTCAAAGA
TTATCACATGTAATCTATCCTCTACTTTTGAAAGAAACCATGTAATTTTC
CACACAATACCATAACTGTTTCTCTTTCTAAACCATTATATCAAAATACC
TTTGTATTAATTATCATAACAGAAAAAAATTTGCATGTTTATGTTTAACT
ATTGTAAAAAATCGTCTTTTTCAAATATGTTCGCCATTTTTCACATTTTT
AACTAATCCCTTATTTTAAAAGAATTAGTTTCCCCCCCTGATGGAAAACC
CGCCTTCTGTTTGGATCTCAAACACCTCTTAACTTTTTTGAACTAATATC
CTTCCCTCAATAATTTTTTTTTTTGAACTGAATGTTTTCTAAACACCTTT
CCCCCCACGCCCTCTGGCCTCTGGTTAACTCTGGTTCTCTCTGCTGTATA
TCTAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_c15.g1 MSMg01no124_c15.g1 CHROMAT_FILE:
MSMg01no124_c15.g1 PHD_FILE: MSMg01no124_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:34:53 2005
         (491 letters)



>mm_chr11_34576200_34577090
          Length = 891

 Score =  872 bits (451), Expect = 0.0
 Identities = 481/491 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgaatgcaatcagaaatgaaagtttcacaagggaagggtctttcaacacttgaacaccc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 gtgaatgcaatcagaaatgaaagtttcacaagagaagggtctttcaacacttgaacaccc 260

                                                                       
Query: 61  aacaatgcagtggcctagataaaagggatgtagtccttgaaagaaactaccaagcttgac 120
           || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 aaaaatgcagtggcctagataaaagggatgtagtccttgaaagaaactaccaaccttgac 320

                                                                       
Query: 121 tcatgagaaaacataagttcagctatcaacccaccaccaccaccaaagagccagtggaga 180
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcatgagaaaacataaattcagctatcaacccaccaccaccaccaaagagccagtggaga 380

                                                                       
Query: 181 tagctcagttagtaaagtgcttaagaagccaacatgaggacttaggcttgcatctctagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagctcagttagtaaagtgcttaagaagccaacatgaggacttaggcttgcatctctagc 440

                                                                       
Query: 241 atccatgtaaaagagctaagcatggtactatgcatctgtaatctcactggaggacgtaga 300
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 atccatgtaaaagagctaagcatggtactatgcatctgtaagctcactggaggacgtaga 500

                                                                       
Query: 301 gacagacagatccctgagttcattagccagccaggcgaactcactcaatgaactccagat 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 501 gacagacagatccctgagttcattagccagccaggcgaactcagtcaatgaactccagat 560

                                                                       
Query: 361 tcagagagaggatctgtctccaaacaagaaaggtgaagaacaattgcagaagacatctga 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct: 561 tcagagagaggatctgtctccaaacaagaaaggtgaagaacaattggagaagacagctga 620

                                                                       
Query: 421 tctttggccgccccacagacacacaaacaaatgtgtgtacaaaaccccacactaatatgt 480
           ||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctttggccaccccacacacacacaaacaaatgtgtgtacaaaaccccacactaatatgt 680

                      
Query: 481 acatagaatac 491
           |||||||||||
Sbjct: 681 acatagaatac 691


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 891
Length adjustment: 10
Effective length of query: 481
Effective length of database: 881
Effective search space:   423761
Effective search space used:   423761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)