BAC Information

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BAC

Clone NameMSMg01-124E17
Chromosome11 (Build37)
Map Location 71,318,301 - 71,459,989
singlet/doubletdoublet
Overlap gene9230020A06Rik
Upstream geneTm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249
Downstream geneWscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-124E17.T7 (MSMg01no124_e17.b1)MSMg01-124E17.TJ (MSMg01no124_e17.g1)
ACCAG333684AG333685
length1,2951,326
length of high quality
(start - end)
351 (156 - 506)282 (123 - 404)
definitionCHROMAT_FILE: MSMg01no124_e17.b1 PHD_FILE: MSMg01no124_e17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:12 2005CHROMAT_FILE: MSMg01no124_e17.g1 PHD_FILE: MSMg01no124_e17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:35:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,318,301 - 71,318,651)(71,459,711 - 71,459,989)
sequence
TCCTTTTCTAACATTGGCGCTAAGACTCACTATGGGAGAGGATCCGCGGA
ATTCAGTATTCATGAGGTCCCCCTATAAAGCCCGCCTGATGCTACTCTGT
GGAAATTTTTCCCCGTTGAGATGTGATTAGTANTATTNTNTANTGTTATT
ATNTTGTAGTATTCTTATCCTGATAGCTCAGCTCCCCCACACTAGCAGGA
TCTGTCAGTGTATCACATGTACATGAGCGTTTGGTTGTATGTATGTTGCA
TCAACATGAGTGTGTGGTGGTATGTATGTTGTATGTCCCTGAGTGTGGAT
GTGCACATGTCCCTGTATGTGCAAGCAGAGGCCAGATGGGGAGGATGTCA
GACATCTTTCTCTATCATCCTCCATCTTATTGCCTTGAGACAAGGTCTTT
CCCTATGATCAGGAAACTCCCAATTCTGAGTTGACTGACTGGCCTGAAAT
AACAAAATTCCTAGTTAAGGGCAAAGGCTGCACCCAGAAGTGTGTGTGTG
TATGGGGGTGTAGCTGAGTGTCCAGGGTCACTGATAGTTTGGCCAGCAAG
ATTTTGGGATTCACTTGTCTCTGCTCCAGAGTTGGATTTACAGGCACACG
TAGCCATTTTACTTTGATTATTGCTTAATGCCTCATTGCTGAAGATTCCA
ACTCAGGTCCTCATGCTTGCACGGTAAGCTGGCTTACCCGGGGAGCCATC
TTCCCAACAGTGTCTGTTTGCTTAATATTCCACCACGATCTTTTTGAGTT
AAAGTAAAATTTGTTCCACAGGTCGAGTCTTGCTTGTCCCAACCGCTAAT
GATTTGATCAAATGTTGGTTTGAAGCCTAGGTCTACTGCTTCCATGAGCA
TCTTCCCCCTAAATACTCTTGTAAGGCTTTGATGTCACGTGTTCTTCCCG
GCCCCCGCCTTTTGCGGTGCTATGTTAACCTATTCCTCCAAAACCCTTAC
TTTGCATCCTTATAACTTTCAAATAATTTTTCCCCATACTCATTTGTATC
CCGCCATCTTTCTATTCCAGGATGTTAAGCTCAGTGTTTTTTTGGTGTAC
TTCAAATTTTTCTCTGTCTATTTCCCTTTTAACTTTTATTGTGAATAAAC
CGCCTCGTTGGGTTTTCTTTTTTGAATTGTGACTCCCCTCCTCTATTAAT
AAAAACACAACCTATTGCCAAAATTGTNTTTGTGGGTATTATAAAATTCT
TTCAATGTGGTTTCTCTTCCTTCATTATATGATATATACATCTCTGGTTT
GACTATATCTCTCCCTCTTTGCCTCCTCTACCGGATCTCTTGCTT
TTTTTACCATTGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTATAAGTTTGCAACCTGGNCCTTAATTTCT
GTCCATAGGCCTTAATAGTCACAAAGGGTCACTAACTACTAAGTGAGGAA
GCAAAAACATTTCTTATTTCGAGGGTGTGGTACGGTCTAGAAGATATTGT
GAAATGGGAATGAGTTAGGTCCCATCTTCAGAAAGCACAATCTGCTATCT
TGTCTGACCTCCAGGACTTAAAATGTGATGGCAACCTTTTTAATTTGCAA
GGAAAGCCCTGTAGTTTTAGAAATAGGAGTTTATGGGCCGGGCGTGGTGG
CACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGAATTTCTG
ATTTCTAGGCCAGCCTGGGATACACAAAGAAACCCTGTCTCAAAAAAAAA
CACATACTCACACAAGAGAGAAGGGAGAGAAAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATATAGA
GAATTATGAGAGGAGTTTCTCTCTCTTCTCTCCTCTTCTCATTTCTCTTC
TTCTTTCTCTTCTTCCTCTTTCTTTCATTTTTTTTTTTTACTTTTTTTTC
TCTCCTCTTTTTTCTTCTTCTTTCTTCTTTTTACCTCTTCCTTTCACCCT
TCCCTTCCCTTATCTTTTTATTTATCCCTTTTTCTCTTATCTTCACTTCT
CCCTCCTCCCTTTTTTTCTCTTCCTCCTTTCTTTCTCGCTCTTCTTTCTC
TTATTCCTATATCCTTTCTTCATTTTTCTCTTCTCTTTTTTTTTCTTTTT
TTACCTTTCTCTTTCTCTCTCCTATTTTTTCTCTTCATCCCTCTTCCCTT
TCCTTTCTCTTACTTTTTCCTATCTCTTTTTCTCTCTTTTTTTTACTTTC
TTATCTCTTTCTTTTTTTCTTTTTTACTTCTCCTCTTTTTCTCCTTTCTT
TTCCTTCTCTCTATTCTCTTCCTTTCCTTTTTCTCCGTCCTCTCTTTCTT
CCTCCTCTCTATTTTTCTATTTCCTCTCTTCTTCCTTTCCTTTTTTCCTT
TCTTTCTTCTATCTTCTCTCCTTCTTCTATCTTTTCTCTCTTTTTTCTTC
TCTCTCTCTTTACTTTTCATCCTTCTTCTTTCTTTTCTTCTCTTTTGTTT
TACACTTTTTTTCCCTTTCCTTTCCTCTTTCTCTCCTATTTTCTCTCCTT
ATTCCCTTCTACTCTTTTCCGCGCCTCTCTTCTTATCCNCTGTCTTTATT
GTTCCATATACTTGCTGCCACTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no124_e17.b1 MSMg01no124_e17.b1 CHROMAT_FILE:
MSMg01no124_e17.b1 PHD_FILE: MSMg01no124_e17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:12 2005
         (351 letters)



>mm_chr11_71318101_71318851
          Length = 751

 Score =  656 bits (339), Expect = 0.0
 Identities = 348/351 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtagtattcttatcctgatagctcagctcccccacactagcaggatctgtcagtgtatca 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gtagtattcttatcctgatagctcagctcccccacactagcaggatctgtcagtgtgtca 260

                                                                       
Query: 61  catgtacatgagcgtttggttgtatgtatgttgcatcaacatgagtgtgtggtggtatgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtacatgagcgtttggttgtatgtatgttgcatcaacatgagtgtgtggtggtatgt 320

                                                                       
Query: 121 atgttgtatgtccctgagtgtggatgtgcacatgtccctgtatgtgcaagcagaggccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgttgtatgtccctgagtgtggatgtgcacatgtccctgtatgtgcaagcagaggccag 380

                                                                       
Query: 181 atggggaggatgtcagacatctttctctatcatcctccatcttattgccttgagacaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atggggaggatgtcagacatctttctctatcatcctccatcttattgccttgagacaagg 440

                                                                       
Query: 241 tctttccctatgatcaggaaactcccaattctgagttgactgactggcctgaaataacaa 300
           |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 tctttcccgatgatcaggaaactcccaattctgagttgactgactggcttgaaataacaa 500

                                                              
Query: 301 aattcctagttaagggcaaaggctgcacccagaagtgtgtgtgtgtatggg 351
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aattcctagttaagggcaaaggctgcacccagaagtgtgtgtgtgtatggg 551


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 351
Length of database: 751
Length adjustment: 9
Effective length of query: 342
Effective length of database: 742
Effective search space:   253764
Effective search space used:   253764
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no124_e17.g1 MSMg01no124_e17.g1 CHROMAT_FILE:
MSMg01no124_e17.g1 PHD_FILE: MSMg01no124_e17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:35:12 2005
         (282 letters)



>mm_chr11_71459585_71460266
          Length = 682

 Score =  501 bits (259), Expect = e-146
 Identities = 274/279 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaagggtcactaactactaagtgaggaagcaaaaacatttcttatttcgagggtgtggta 60
           ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 405 aaagggtcactaactcctaagtgaggaagcaaaaacatttcttatttcgggggtgtggta 346

                                                                       
Query: 61  cggtctagaagatattgtgaaatgggaatgagttaggtcccatcttcagaaagcacaatc 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 345 aggtctagaagatattgtgaaatgggaatgagttaggtcccatcttcagaaagcacaacc 286

                                                                       
Query: 121 tgctatcttgtctgacctccaggacttaaaatgtgatggcaacctttttaatttgcaagg 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 285 tgctatcttgtctgacctccaggacttgaaatgtgatggcaacctttttaatttgcaagg 226

                                                                       
Query: 181 aaagccctgtagttttagaaataggagtttatgggccgggcgtggtggcacacaccttta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 aaagccctgtagttttagaaataggagtttatgggccgggcgtggtggcacacaccttta 166

                                                  
Query: 241 atcccagcacttgggaggcagaggcaggcgaatttctga 279
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 165 atcccagcacttgggaggcagaggcaggcgaatttctga 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)