BAC Information

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BAC

Clone NameMSMg01-128J17
Chromosome11 (Build37)
Map Location 16,209,001 - 16,209,287
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC665660, Vstm2
Downstream geneSec61g, Akt2-ps, LOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik, Plek, 1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128J17.T7 (MSMg01no128_j17.b1)MSMg01-128J17.TJ (MSMg01no128_j17.g1)
ACCAG336831AG336832
length704699
length of high quality
(start - end)
459 (74 - 532)290 (72 - 361)
definitionCHROMAT_FILE: MSMg01no128_j17.b1 PHD_FILE: MSMg01no128_j17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:45 2005CHROMAT_FILE: MSMg01no128_j17.g1 PHD_FILE: MSMg01no128_j17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGGATCCG
CGGAATTCTGCTTGTTCTCAAAACGCTGAATAGCTCTTTTTCAAATTAAT
CATTCTGTTCGTTTACATCTCCAATGATATCCCACTTCCAGGTTACCCCT
CCACAAAACTCCCATCCCACATCCACCCTCTATGCCCTTCCCTTTGCCTC
CATGATGGTGCTTCCCCACCCAACCAACCTCTCCTGTCCCACCCCTCCAG
CATCCCCCCTACACTGGGGCATCACACTTCCAAAGGGCTATATCTCCCAT
TGCTGTCAGGCAAGGCCATTCTCTGCTACATATGTATCTGGAGTCATGGA
TTCCTCCCTGTATACTCCTTGGTTGGCGGTCTAGTCTTTGGGAGCACTGG
GTGGTCTGGTCAGCTGATATTCTTCTTCTCATGGAGTTGCAATTTTCCTC
AGCTCCTCCTGAAGCTGAAGGAAGGGCCATCTGGGAATCCATCCTATCTG
CAAACACTAAACCTTACACTGTTGCTGTGGTCAAGAGGCACTTGCTGACA
AGAACTAGGTGAGGCTGCTCCTTGTGAGGTCCAGCCAGCAACTGTCCAAT
GCTGAATAGCTCCAGAGGAGCACTTGAAAGCACTGCGCAAAAGCTCATAG
TGAATGAAAGAAGTTTGAGTGACAAATAAAGCAGAATATCCCTCATTTAC
TAGA
ATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAAATGAACTTGTGGGAGAATTAGTGAGAG
GTCACTCTTTTGGCCAGCCGAAGTTTGGTAGAAAGCTCATTTCAGCAAAG
GAAAGCTGGAGTTCTTGCTCTTAAAGGCCCAGAAATGAACACAAGAAGGG
CATAAGACTGTGGCCTCCAGTGTGTAACCTTGGGGCTGAAGCATGAATGT
CTTTTGTGTTCTGAACCTTAGCGACTGAGACTAAAGTTCACTTATTCTTT
TGAGAATTCTTGTTACAGTCTGTGTTTTGATTCATGGCTACAGAGATTCT
GCATTTGCTACAAGATTCCCCATAATCAAGATGCTGTGACTCTGAATAAC
ACATTTTCACCACAACCATGGTGTCTATTCAGCTAATGGTTATTACAGTT
CCCCTTGTGATCTATCCAGGGCAGCTATTGCTGTGGGTGGGGACATGGTA
GCAAGAGATAGTGCTGTCGATTCTAAATGCCTGGCGTGTTGTTTCTTTTA
TTTGTTTATCTTATTTTAATTACAACAGTTCTGCCTCTGCTTTTCTTCTT
CCAAACATTCCCATATACCTCTCCCAGCTCTCCAGCAAATTTATTGGCCT
CTCTTTTCAATTGTTATCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_j17.g1 MSMg01no128_j17.g1 CHROMAT_FILE:
MSMg01no128_j17.g1 PHD_FILE: MSMg01no128_j17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:45 2005
         (290 letters)



>mm_chr11_16208801_16209490
          Length = 690

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aaatgaacttgtgggagaattagtgagaggtcactcttttggccagccgaagtttggtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 487 aaatgaacttgtgggagaattagtgagaggtcactcttttggccagttgaagtttggtag 428

                                                                       
Query: 61  aaagctcatttcagcaaaggaaagctggagttcttgctcttaaaggcccagaaatgaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 aaagctcatttcagcaaaggaaagctggagttcttgctcttaaaggcccagaaatgaaca 368

                                                                       
Query: 121 caagaagggcataagactgtggcctccagtgtgtaaccttggggctgaagcatgaatgtc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 367 caagaagggcataagactgtggcctccagtgtgtaaccttggggctgaagtatgaatgtc 308

                                                                       
Query: 181 ttttgtgttctgaaccttagcgactgagactaaagttcacttattcttttgagaattctt 240
           ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 307 ttttgtgttctgaaccttagcaactgagactaaagttcacttattctcttgagaattctt 248

                                                          
Query: 241 gttacagtctgtgttttgattcatggctacagagattctgcatttgc 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gttacagtctgtgttttgattcatggctacagagattctgcatttgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)