BAC Information

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BAC

Clone NameMSMg01-128M02
Chromosome11 (Build37)
Map Location 51,868,623 - 51,868,800
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3
Downstream geneLOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523, Fstl4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-128M02.T7 (MSMg01no128_m02.b1)MSMg01-128M02.TJ (MSMg01no128_m02.g1)
ACCAG336943AG336944
length709721
length of high quality
(start - end)
252 (73 - 324)178 (73 - 250)
definitionCHROMAT_FILE: MSMg01no128_m02.b1 PHD_FILE: MSMg01no128_m02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:57 2005CHROMAT_FILE: MSMg01no128_m02.g1 PHD_FILE: MSMg01no128_m02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:41:57 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGGATCCGCG
GAATTCTTAAATACTCCTGACATGGTACACCTGCTTATTTGATTTTTAAA
GTTTTATTTTCTTTGCATTTTACCACGGGACCCTGTTTGGCACAGAGTAG
CTGTAAATTCAGTATGTTGACCAGGTTGGTCTAAAATTCATGATCTCCTT
CCACCTGCGCTGGGGTCACAGGCATTTTCACCACATATATACTTGCCTGA
AACTCTTGTTTTGTTTTGAGACAGGGTCTTACTATATAAGGCTTGGAGCT
CGCTATTTAAACTCAGATGTCTGCCTCCCAATACCCAGCTTGGAGATTCG
AGGCTAGGACCACCCTGTTGGCTAATCTTCACCTTTATTTCCTACCTTTG
AACTTTGAAGAGGCTTCCAGGCCCCTAAATAGCCATTGTTGGAGTGAAGC
GCCAAGCCTGGAGAGAGTCCATGTGAGTGTAGCATGGAGGTTACATTCTT
TGGCTAACCATGCTCTAGGCCAATCTGTGATGCCAGCGCTGGCCATCCAT
CCAGCAATGATCGGCGACAGCTCCTTCTCACCCTGATCACGCTATGCTGT
ATAGGCGGTTCATAGAATGCTGTGATCACGTCTTTATAATGACACAGTTT
TTTAAGCACAGGGAGAGGCCTGAAATCACCCATCTGGCCCTCACCCCATC
AGCAATACG
NACCGATGAAGTGGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGCCTGGGGGTTATAATTAATCCTTAG
ACGTGGAATCATACACCTTACAACACTGAACCTCTTCACAGTGAAGGAGA
TGGGGATATGGGGAGTGGCTCCTGATCATGGGCTCTTCTGGTACTGTCAC
ACAGAGTCCCATCCTAAGGCATCCAGCCTTGTGAGATGCTGGACCAGCCT
TTGTACATCAGAGGAAATGCAAAGAATGATGGGCTATTCTGTGGGCTGTA
TACTAAGTCATAGACCTTTTAGAGTACTTATCCAACAGGTAAGATACTTG
AGTGCGGTAGTCAGGCATGGGACCAGAAGTAGCTCCAGTGACCATCGCTC
CTAACATAGGGGCTCACACATCACTTATAGTGTGTTGTGTTCTCATTTCT
ATACCCCCTGACCTCTGGTTCAGAGACATGCACACTCCCCCTCTCATATA
CTATAATTTTAATCACTAAAGGGCTCGCTCCTTGCCTAGCCCTAACTATG
ATCTCTCCGTCAATACGTTTCACTAGCCCTTCCTTGTTCCTGCGCTTCAG
ATATTTCTCATATTGTCATCACCGTCTCCTCTTTTTGACTAACCTACTTT
CTTTGTCGCTCGTGTTTCATTCCACACTGGCAAATAACATCTTGTGCCTT
CTTTACATCTTTTCCTAATTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no128_m02.g1 MSMg01no128_m02.g1 CHROMAT_FILE:
MSMg01no128_m02.g1 PHD_FILE: MSMg01no128_m02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:41:57 2005
         (178 letters)



>mm_chr11_51868423_51869000
          Length = 578

 Score =  337 bits (174), Expect = 3e-97
 Identities = 177/178 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgcctgggggttataattaatccttagacgtggaatcatacaccttacaacactgaacc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 ttgcctgggggttataattaatccttagacatggaatcatacaccttacaacactgaacc 260

                                                                       
Query: 61  tcttcacagtgaaggagatggggatatggggagtggctcctgatcatgggctcttctggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcacagtgaaggagatggggatatggggagtggctcctgatcatgggctcttctggt 320

                                                                     
Query: 121 actgtcacacagagtcccatcctaaggcatccagccttgtgagatgctggaccagcct 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actgtcacacagagtcccatcctaaggcatccagccttgtgagatgctggaccagcct 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 178
Length of database: 578
Length adjustment: 8
Effective length of query: 170
Effective length of database: 570
Effective search space:    96900
Effective search space used:    96900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)