BAC Information

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BAC

Clone NameMSMg01-130N11
Chromosome11 (Build37)
Map Location 77,350,595 - 77,494,267
singlet/doubletdoublet
Overlap geneTaok1, LOC668641
Upstream geneAbr, LOC100043483, A830053O21Rik, Tusc5, Gosr1, Cpd, Tmigd1, Blmh, Slc6a4, Ccdc55, Efcab5, LOC628108, Ssh2, LOC544800, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik
Downstream geneNufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119, Foxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20, Tmem97, Nlk, LOC100043570
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-130N11.T7 (MSMg01no130_n11.b1)MSMg01-130N11.TJ (MSMg01no130_n11.g1)
ACCAG338494AG338495
length1,234694
length of high quality
(start - end)		347 (477 - 823)621 (74 - 694)
definitionCHROMAT_FILE: MSMg01no130_n11.b1 PHD_FILE: MSMg01no130_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:50 2005CHROMAT_FILE: MSMg01no130_n11.g1 PHD_FILE: MSMg01no130_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:44:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,350,595 - 77,350,938)(77,493,735 - 77,494,267)
sequence
NCGGTTTCTTNNNNNGGACAATGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATAAGGTACTACAGCCCCATAAAGAGCCATTAAGCAC
AGAGGACCTGTAAATGAAGCCCTTACAACAGCGTGAAGATCAGTCAGCAG
CTGATAGTCATTGGCTCAGTGACTCCTGGTGGCAACTAAGTACCTTAAAT
AATTGACTATTGCTACCTGTAAACAGGAAATCCCATGAGCTAAAAAGGGG
GCAGTAAAACTATGTCTATGTAGTGTGATGAATATGCTAATAGATGGCAG
TTCAAATATGGCATCATCCAATACCTCTGGCATTTGCTTTGTGTTGGCTA
TAGGTCTTCATTTTTGTACAAACAAAGCAAAGGTACTGTTTGGAGTCTCA
AGTTTGGTTTTTATGAGATATTGTACAAGAAACAAAATGTCAGGCTAGCT
ATACAGGCTTTTTTTCCTCCCCCCTGAGCATCCCTGTCACAGGAACTTTC
AGGGGCCCCTCTCGCCCTCTAGTTTTTCCCCTCTGAAAGCTCACAGGCTT
GTTAGTGCAATAGCCACACAGCTTATGATCTCCTTATGCAACTCCGTCTT
ACGATGATACAACCTACAAAATCTGACAAAATTCTGAAGCATTTATAGCA
AAGAACTAAATGATTTTCTACCACTGAAAAGGTAAATGCAATCTTTTAAT
GTTCATGGTCTTGTTTTTTAGTTCAAATGAGGTTGAGAAATCAGATCAAT
TCATAAATAAAGAAAACCCACTGGTGAGGAGTGGAGGTGTATGTGCTTCA
GCATGGATGCTGCCTGCTGTCAGGGACTCACAGAACTGGAATATGAAGGA
AGGCTTTAGATCTTCTGACACATTTCTTAGGCTATGCATACCCTAAAGTG
ATGATTCAGATTAGCTTGCTTCATTCTGGTTTTATATTGTTCAGATAATA
CCCCTTCTAATTAACCCAATTTTTTTTTTGCCCCATACCTGAAATACTTT
ATCTATTATCCCTTTAAAATTTTCCAAAAGTTAACCCAAAAACAAAAAGC
CTACCCCCAAAAACCCCCGGAGGCCATATCTATGTAATTCCCCTTTTTTA
AACACCAAACTTTACCCTTTTAAAAAACAAATTAAAATTTTCCTTTTTGC
CGGCTTTCCCCCCGTAAGTTCCCCTTTTAAGAAATCTCTTTGTTAAAATA
TTCCATTATACATTTCTTTTTTGAAACAATTCCC

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTCTGTTCCACTTTTCCCTTGTTTG
GGCCGATTACTAAGCCCCTCTAAAATTTTTCATCCGAAAACCTAATTCAT
GGGTTTTAATGAGGTAGGTTTAAATAAAGTTGCTAACAAATACTTTTTAA
AAATAATTTACTTCTATTTTATGTAAATTGGTTTTTTTGACTACATGTAT
GTCTGTGTGAGGGTGTCAGATTCCCTGGGAACAGGAGTTAAGGACATGTG
GGCACTGGGCCTCTAGAAGAGCAGCCAGTACTCTTAACGGCTGAGCCATC
TTCCCAGCCCCCACTAACAAATACTTCTAATGTCAGTAAATGATACTGTT
TTAAATATTGATGCTACAAAATGATGTATTTTATATGTTGTGGTCTATAT
TCCACCACAGCCACTACCACTACCACCTCAACCCCTGCCTCAAGGAAGGG
TCGTCTTCCTATTTTATCCAAACTGGTTTTGAATATCTGTGCTCAGTTTG
GAACTAACTTTGTCTCCCAGGCTTTTGTGTGTTTAAAGCTGGTTGTCAGC
ATGTGGTACCATTGATTGGCCTTTGACTCTTTAGGAAGTGGAACCGAGTA
AAAGGAAGTGTGGTTGTCTTAGTTAGAGTTACTATTGTTGTGAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no130_n11.b1 MSMg01no130_n11.b1 CHROMAT_FILE:
MSMg01no130_n11.b1 PHD_FILE: MSMg01no130_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:50 2005
         (347 letters)



>mm_chr11_77350395_77351141
          Length = 747

 Score =  650 bits (336), Expect = 0.0
 Identities = 342/344 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcatccctgtcacaggaactttcaggggcccctctcgccctctagtttttcccctctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcatccctgtcacaggaactttcaggggcccctctcgccctctagtttttcccctctga 260

                                                                       
Query: 61  aagctcacaggcttgttagtgcaatagccacacagcttatgatctccttatgcaactccg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagctcacaggcttgttagtgcaatagccacacagcttatgatctccttatgcaactccg 320

                                                                       
Query: 121 tcttacgatgatacaacctacaaaatctgacaaaattctgaagcatttatagcaaagaac 180
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 321 tcttacgatgatacaacctacaaaatctgacaaaattctgaatcatttatagcaaagaac 380

                                                                       
Query: 181 taaatgattttctaccactgaaaaggtaaatgcaatcttttaatgttcatggtcttgttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaatgattttctaccactgaaaaggtaaatgcaatcttttaatgttcatggtcttgttt 440

                                                                       
Query: 241 tttagttcaaatgaggttgagaaatcagatcaattcataaataaagaaaacccactggtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttagttcaaatgaggttgagaaatcagatcaattcataaataaagaaaacccactggtg 500

                                                       
Query: 301 aggagtggaggtgtatgtgcttcagcatggatgctgcctgctgt 344
           ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggagcggaggtgtatgtgcttcagcatggatgctgcctgctgt 544


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space:   249444
Effective search space used:   249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no130_n11.g1 MSMg01no130_n11.g1 CHROMAT_FILE:
MSMg01no130_n11.g1 PHD_FILE: MSMg01no130_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:44:50 2005
         (621 letters)



>mm_chr11_77493247_77494267
          Length = 1021

 Score = 1015 bits (525), Expect = 0.0
 Identities = 531/533 (99%)
 Strand = Plus / Minus

                                                                        
Query: 89   aggtaggtttaaataaagttgctaacaaatactttttaaaaataatttacttctatttta 148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 aggtaggtttaaataaagttgctaacaaatactttttaaaaataatttacttctatttta 962

                                                                        
Query: 149  tgtaaattggtttttttgactacatgtatgtctgtgtgagggtgtcagattccctgggaa 208
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  tgtaaattggtttttttgactacatgtatgtctgtgtgagggtgtcagattccctgggaa 902

                                                                        
Query: 209  caggagttaaggacatgtgggcactgggcctctagaagagcagccagtactcttaacggc 268
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  caggagttaaggacatgtgggcactgggcctctagaagagcagccagtactcttaacggc 842

                                                                        
Query: 269  tgagccatcttcccagcccccactaacaaatacttctaatgtcagtaaatgatactgttt 328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  tgagccatcttcccagcccccactaacaaatacttctaatgtcagtaaatgatactgttt 782

                                                                        
Query: 329  taaatattgatgctacaaaatgatgtattttatatgttgtggtctatattccaccacagc 388
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 781  taaatattgatgctacaaaatgatgtattttatatgttgtggtctgtattccaccacagc 722

                                                                        
Query: 389  cactaccactaccacctcaacccctgcctcaaggaagggtcgtcttcctattttatccaa 448
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 721  cactaccactaccacctcaacccctgcctcaaggaagggtcttcttcctattttatccaa 662

                                                                        
Query: 449  actggttttgaatatctgtgctcagtttggaactaactttgtctcccaggcttttgtgtg 508
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  actggttttgaatatctgtgctcagtttggaactaactttgtctcccaggcttttgtgtg 602

                                                                        
Query: 509  tttaaagctggttgtcagcatgtggtaccattgattggcctttgactctttaggaagtgg 568
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  tttaaagctggttgtcagcatgtggtaccattgattggcctttgactctttaggaagtgg 542

                                                                 
Query: 569  aaccgagtaaaaggaagtgtggttgtcttagttagagttactattgttgtgat 621
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  aaccgagtaaaaggaagtgtggttgtcttagttagagttactattgttgtgat 489


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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