BAC Information

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BAC

Clone NameMSMg01-131E02
Chromosome11 (Build37)
Map Location 4,718,612 - 4,718,901
singlet/doubletsinglet
Overlap geneNf2
Upstream geneOsbp2, LOC664920, 4921536K21Rik, Dusp18, Slc35e4, Tcn2, LOC100041720, Pes1, Gal3st1, Sec14l4, Sec14l3, 1700020C11Rik, Sec14l2, LOC625729, Rnf215, 4930562D19Rik, Sf3a1, Tbc1d10a, 2410008K03Rik, LOC625760, Osm, Lif, Hormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7
Downstream geneNipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1, Znrf3, LOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-131E02.T7 (MSMg01no131_e02.b1)MSMg01-131E02.TJ (MSMg01no131_e02.g1)
ACCAG338805AG338806
length707764
length of high quality
(start - end)
290 (368 - 657)51 (258 - 308)
definitionCHROMAT_FILE: MSMg01no131_e02.b1 PHD_FILE: MSMg01no131_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:24 2005CHROMAT_FILE: MSMg01no131_e02.g1 PHD_FILE: MSMg01no131_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:45:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCTCATAATTTGCGGCGCTAAACGACTCCAATTTCGGAGTGGAGCGCGGA
ATTCCTCATTGCAAAAAAGGTCCGAGCTTTTCAGGGGATGGGTAGGATTG
TTAGAAGATTAAATGCAACGGGTTATTTACTGCACTGCAAGCATTTTGTG
GACATCTCTGGAAGATTCCGGGAACAAAGCATTGCCGTGATGGATATGTT
TCACTTCTAGTATTCATAACATGTAAATGATCTGTTTAAGCTGTGTTCCA
GTGAAACCTATTAGAGTGGGCAGTAAGAAAAAAAAGAATAAAGGTAGATG
TAGTTATTTCAGTCTTCTATATTGATATGCCCAGGATCTTGGAGTTTTAG
ATTCTAGTTTGTAACCATTTTCTGTGGCTTTGAGAATCCTGGTGCTGTCA
CTGTGGCTCCGCTCACCCTGTGGGTTATTGATTGATTTGGTTCAGAACCC
CTGCATGAAGTGGATATTATATCCTGCTATGGATGGCTCTGTGAGTGCTT
CGAATTGTATAACACACACAGCCTTTAGGAAATGGGAAGAATGTAACGGG
AAGGGATTGTCTACCTTCCCTGCAAAGCACGCTTGGAAGGTAATAGAAGG
TGCCAGCACAGCATGTCTTCTGCTCTGCAATTCTGCAGGTGTTGGATCAT
GATGTTTCTAAGGAAGAACCAGTTACCTTTCACTTCCTGGCCAAATTTTA
TCCTGAN
CGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGAGATCATCTGTCAGATATTTACG
CTATCAGTTATTTTTAATGTTAAGAATGCTTTTAACTACCCGGTTACCCA
GGTTTGTTGTGTTTTGAGACCTGCTCTGNCTCTTTAGTCCAGGCTGGCCA
GAAAGTTGAGACCCTCCTAGCTCAGCTTGCTGAGTGTTGTGGTTAGTGGT
TTACACCGATTATTCCTAGGGCCAGGCTGAGCACAGCCACTCTGACTTAC
TCTTAATTGTTAAGCTCTCGGGATATGAATAGAACTTGCGCGGGGGGAGG
AATTTCTCCAAATCTATGAATTGCGCTACGCATCGGCTAACACCTGCTGC
TCCTTCTGTGATCTGAAATAAATAATGATCCGGCTGTTTCCATGAATGTT
GTCTTCTGCATGTGAGGTTAACTTTTTTCCTCAAAAATCTGTTCTTACGT
GGGATCCGAAATCTAAGAATAACATGCACAATCTCGGGGGCGTTTATCAG
AAATAATAAAACCATATTTTCGGGGTGTCTGTTCTCTCTGTTTATTACTC
AAAAAACAACCTATGTGTTGTATCCCACGTCCCTGCTCCTTATCTAGTGT
TGTGTCACAATAAACAAAACAAATAAGAAGTTTGGGCGCCCACACCCCAC
ACCCGTGTTTGTGTGCGGCGTGTTTGGGTGGAAAAAGAATTTAAAATAAA
TGGGTGGTGGGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no131_e02.b1 MSMg01no131_e02.b1 CHROMAT_FILE:
MSMg01no131_e02.b1 PHD_FILE: MSMg01no131_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:45:24 2005
         (290 letters)



>mm_chr11_4718412_4719101
          Length = 690

 Score =  538 bits (278), Expect = e-157
 Identities = 287/290 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttctgtggctttgagaatcctggtgctgtcactgtggctccgctcaccctgtgggtta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 ttttctgtggctttgagaatcctggtgctgtcactgtggctccgctcaccctgtgggtta 431

                                                                       
Query: 61  ttgattgatttggttcagaacccctgcatgaagtggatattatatcctgctatggatggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttgattgatttggttcagaacccctgcatgaagtggatattatatcctgctatggatggc 371

                                                                       
Query: 121 tctgtgagtgcttcgaattgtataacacacacagcctttaggaaatgggaagaatgtaac 180
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tctgtgagtgcttccaattgtataacacacacagcctttaggaaatgggaagaatgtaac 311

                                                                       
Query: 181 gggaagggattgtctaccttccctgcaaagcacgcttggaaggtaatagaaggtgccagc 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct: 310 gggaagggattgtctaccttccctgcaaagcacgctttgaaggtaatagaaggggccagc 251

                                                             
Query: 241 acagcatgtcttctgctctgcaattctgcaggtgttggatcatgatgttt 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 acagcatgtcttctgctctgcaattctgcaggtgttggatcatgatgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)